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基因表达和小RNA测序表明,在不同光照条件下,基因分化与鸡爪槭黄色突变体叶片相关。

Gene Expressing and sRNA Sequencing Show That Gene Differentiation Associates with a Yellow Acer palmatum Mutant Leaf in Different Light Conditions.

作者信息

Li Shu-Shun, Li Qian-Zhong, Rong Li-Ping, Tang Ling, Zhang Bo

机构信息

Institute of Horticulture, Jiangsu Academy of Agricultural Sciences, No. 50 Zhonglingjie, Nanjing 210014, China.

College of Biology and The Environment, Nanjing Forestry University, No. 159 Longpan Road, Nanjing 210037, China.

出版信息

Biomed Res Int. 2015;2015:843470. doi: 10.1155/2015/843470. Epub 2015 Dec 15.

Abstract

Acer palmatum Thunb., like other maples, is a widely ornamental-use small woody tree for leaf shapes and colors. Interestingly, we found a yellow-leaves mutant "Jingling Huangfeng" turned to green when grown in shade or low-density light condition. In order to study the potential mechanism, we performed high-throughput sequencing and obtained 1,082 DEGs in leaves grown in different light conditions that result in A. palmatum significant morphological and physiological changes. A total of 989 DEGs were annotated and clustered, of which many DEGs were found associating with the photosynthesis activity and pigment synthesis. The expression of CHS and FDR gene was higher while the expression of FLS gene was lower in full-sunlight condition; this may cause more colorful substance like chalcone and anthocyanin that were produced in full-light condition, thus turning the foliage to yellow. Moreover, this is the first available miRNA collection which contains 67 miRNAs of A. palmatum, including 46 conserved miRNAs and 21 novel miRNAs. To get better understanding of which pathways these miRNAs involved, 102 Unigenes were found to be potential targets of them. These results will provide valuable genetic resources for further study on the molecular mechanisms of Acer palmatum leaf coloration.

摘要

鸡爪槭(Acer palmatum Thunb.)与其他枫树一样,因其叶片形状和颜色而成为广泛用于观赏的小型木本植物。有趣的是,我们发现一种黄叶突变体“金陵黄枫”在遮荫或低密度光照条件下生长时会变成绿色。为了研究其潜在机制,我们进行了高通量测序,并在不同光照条件下生长的叶片中获得了1082个差异表达基因(DEGs),这些基因导致鸡爪槭出现显著的形态和生理变化。总共989个DEGs被注释和聚类,其中许多DEGs被发现与光合作用活性和色素合成有关。在全光照条件下,CHS和FDR基因的表达较高,而FLS基因的表达较低;这可能导致在全光照条件下产生更多像查尔酮和花青素这样的有色物质,从而使叶子变成黄色。此外,这是首个可获得的包含67个鸡爪槭miRNA的集合,其中包括46个保守miRNA和21个新miRNA。为了更好地了解这些miRNA涉及哪些途径,发现102个单基因是它们的潜在靶标。这些结果将为进一步研究鸡爪槭叶片着色的分子机制提供有价值的遗传资源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f3b7/4692996/9d643611a95e/BMRI2015-843470.001.jpg

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