Gesson Kevin, Rescheneder Philipp, Skoruppa Michael P, von Haeseler Arndt, Dechat Thomas, Foisner Roland
Department of Medical Biochemistry, Medical University of Vienna, A-1030 Vienna, Austria;
Center for Integrative Bioinformatics Vienna, Max F. Perutz Laboratories (MFPL), Medical University of Vienna and University of Vienna, Vienna Biocenter (VBC), A-1030 Vienna, Austria;
Genome Res. 2016 Apr;26(4):462-73. doi: 10.1101/gr.196220.115. Epub 2016 Jan 21.
Lamins are components of the peripheral nuclear lamina and interact with heterochromatic genomic regions, termed lamina-associated domains (LADs). In contrast to lamin B1 being primarily present at the nuclear periphery, lamin A/C also localizes throughout the nucleus, where it associates with the chromatin-binding protein lamina-associated polypeptide (LAP) 2 alpha. Here, we show that lamin A/C also interacts with euchromatin, as determined by chromatin immunoprecipitation of euchromatin- and heterochromatin-enriched samples. By way of contrast, lamin B1 was only found associated with heterochromatin. Euchromatic regions occupied by lamin A/C overlap with those bound by LAP2alpha, and lack of LAP2alpha in LAP2alpha-deficient cells shifts binding of lamin A/C toward more heterochromatic regions. These alterations in lamin A/C-chromatin interactions correlate with changes in epigenetic histone marks in euchromatin but do not significantly affect gene expression. Loss of lamin A/C in heterochromatic regions in LAP2alpha-deficient cells, however, correlated with increased gene expression. Our data show a novel role of nucleoplasmic lamin A/C and LAP2alpha in regulating euchromatin.
核纤层蛋白是核外周核纤层的组成成分,并与异染色质基因组区域相互作用,这些区域被称为核纤层相关结构域(LADs)。与主要存在于核外周的核纤层蛋白B1不同,核纤层蛋白A/C也定位于整个细胞核,在那里它与染色质结合蛋白核纤层相关多肽(LAP)2α相互作用。在这里,我们通过对富含常染色质和异染色质的样本进行染色质免疫沉淀分析发现,核纤层蛋白A/C也与常染色质相互作用。相比之下,仅发现核纤层蛋白B1与异染色质相关。核纤层蛋白A/C占据的常染色质区域与LAP2α结合的区域重叠,并且在LAP2α缺陷细胞中缺乏LAP2α会使核纤层蛋白A/C的结合向更多异染色质区域转移。核纤层蛋白A/C与染色质相互作用的这些改变与常染色质中表观遗传组蛋白标记的变化相关,但对基因表达没有显著影响。然而,在LAP2α缺陷细胞的异染色质区域中核纤层蛋白A/C的缺失与基因表达增加相关。我们的数据表明核质中的核纤层蛋白A/C和LAP2α在调节常染色质方面具有新的作用。