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白蜡虫过冷却能力的转录组学和蛋白质组学分析及抗冻蛋白挖掘

Transcriptomic and proteomic analyses on the supercooling ability and mining of antifreeze proteins of the Chinese white wax scale insect.

作者信息

Yu Shu-Hui, Yang Pu, Sun Tao, Qi Qian, Wang Xue-Qing, Chen Xiao-Ming, Feng Ying, Liu Bo-Wen

机构信息

Research Institute of Resources Insects, Chinese Academy of Forestry, Key Laboratory of Cultivating and Utilization of Resources Insects of State Forestry Administration, Kunming, China.

出版信息

Insect Sci. 2016 Jun;23(3):430-7. doi: 10.1111/1744-7917.12320. Epub 2016 Apr 1.

Abstract

The Chinese white wax scale insect, Ericerus pela, can survive at extremely low temperatures, and some overwintering individuals exhibit supercooling at temperatures below -30°C. To investigate the deep supercooling ability of E. pela, transcriptomic and proteomic analyses were performed to delineate the major gene and protein families responsible for the deep supercooling ability of overwintering females. Gene Ontology (GO) classification and Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis indicated that genes involved in the mitogen-activated protein kinase, calcium, and PI3K-Akt signaling pathways and pathways associated with the biosynthesis of soluble sugars, sugar alcohols and free amino acids were dominant. Proteins responsible for low-temperature stress, such as cold acclimation proteins, glycerol biosynthesis-related enzymes and heat shock proteins (HSPs) were identified. However, no antifreeze proteins (AFPs) were identified through sequence similarity search methods. A random forest approach identified 388 putative AFPs in the proteome. The AFP gene ep-afp was expressed in Escherichia coli, and the expressed protein exhibited a thermal hysteresis activity of 0.97°C, suggesting its potential role in the deep supercooling ability of E. pela.

摘要

白蜡虫(Ericerus pela)能在极低温度下存活,一些越冬个体在温度低于-30°C时会出现过冷却现象。为了研究白蜡虫的深度过冷却能力,进行了转录组和蛋白质组分析,以确定负责越冬雌虫深度过冷却能力的主要基因和蛋白质家族。基因本体论(GO)分类和京都基因与基因组百科全书(KEGG)分析表明,参与丝裂原活化蛋白激酶、钙和PI3K-Akt信号通路以及与可溶性糖、糖醇和游离氨基酸生物合成相关的通路的基因占主导地位。鉴定出了负责低温应激的蛋白质,如冷适应蛋白、甘油生物合成相关酶和热休克蛋白(HSPs)。然而,通过序列相似性搜索方法未鉴定出抗冻蛋白(AFPs)。一种随机森林方法在蛋白质组中鉴定出388个假定的AFPs。AFP基因ep-afp在大肠杆菌中表达,表达的蛋白质表现出0.97°C的热滞活性,表明其在白蜡虫深度过冷却能力中的潜在作用。

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