Carraro Nicolas, Libante Virginie, Morel Catherine, Charron-Bourgoin Florence, Leblond Pierre, Guédon Gérard
INRA, DynAMic, UMR1128, Vandoeuvre-lès-Nancy, France.
Université de Lorraine, DynAMic, UMR1128, Vandoeuvre-lès-Nancy, France.
Microbiology (Reading). 2016 Apr;162(4):622-632. doi: 10.1099/mic.0.000219.
Integrative and conjugative elements (ICEs) are mobile genetic elements encoding their own excision from a replicon of their bacterial host, transfer by conjugation to a recipient bacterium and reintegration for maintenance. The conjugation, recombination and regulation modules of ICEs of the ICE family are grouped together in a region called the ICE 'core region'. In addition to this core region, elements belonging to this family carry a highly variable region including cargo genes that could be involved in bacterial adaptation or in the maintenance of the element. Although ICEs are a major class of mobile elements through bacterial genomes, the functionality of an element encoding only its excision, transfer, integration and regulation has never been demonstrated experimentally. We engineered MiniICE, an artificial ICE derived from ICE, devoid of its cargo genes and thus only harbouring the core region. The functionality of this minimal element was assessed. MiniICE was found to be able to excise at a rate of 3.1 %, transfer with a frequency of 1.0 × 10 transconjugants per donor cell and stably maintain by site-specific integration into the 3' end of the gene, the same as ICE. Furthermore, MiniICE was found in ∼10 copies per chromosome, this multicopy state likely contributing to its stability for >100 generations even in the absence of selection. Therefore, although ICEs were primarily assumed to only replicate along with the chromosome, our results uncovered extrachromosomal rolling-circle replicating plasmid-like forms of MiniICE.
整合与接合元件(ICEs)是可移动遗传元件,能够编码自身从细菌宿主复制子上的切除、通过接合转移至受体细菌并重新整合以实现维持。ICE家族ICEs的接合、重组和调控模块聚集在一个称为ICE“核心区域”的区域。除了这个核心区域外,属于该家族的元件还携带一个高度可变区域,其中包括可能参与细菌适应性或元件维持的货物基因。尽管ICEs是细菌基因组中主要的一类可移动元件,但仅编码其切除、转移、整合和调控的元件的功能从未通过实验得到证实。我们构建了MiniICE,一种源自ICE的人工ICE,不含其货物基因,因此仅包含核心区域。对这个最小元件的功能进行了评估。发现MiniICE能够以3.1%的速率切除,转移频率为每供体细胞1.0×10个接合子,并且通过位点特异性整合到基因的3'端实现稳定维持,与ICE相同。此外,发现每条染色体上约有10个MiniICE拷贝,这种多拷贝状态可能有助于其即使在没有选择的情况下也能稳定存在超过100代。因此,尽管最初认为ICEs仅与染色体一起复制,但我们的结果揭示了MiniICE的染色体外滚环复制质粒样形式。