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经过合理设计的小干扰RNA,不存在类似微小RNA的脱靶抑制效应。

Rationally designed siRNAs without miRNA-like off-target repression.

作者信息

Seok Heeyoung, Jang Eun-Sook, Chi Sung Wook

机构信息

Division of Life Sciences, College of Life Sciences and Biotechnology, Korea University, Seoul 02841, Korea.

EncodeGEN Co. Ltd., Seoul 06329, Korea.

出版信息

BMB Rep. 2016 Mar;49(3):135-6. doi: 10.5483/bmbrep.2016.49.3.019.

Abstract

Small interfering RNAs (siRNAs) have been developed to intentionally repress a specific gene expression by directing RNA-induced silencing complex (RISC), mimicking the endogenous gene silencer, microRNAs (miRNAs). Although siRNA is designed to be perfectly complementary to an intended target mRNA, it also suppresses hundreds of off-targets by the way that miRNAs recognize targets. Until now, there is no efficient way to avoid such off-target repression, although the mode of miRNA-like interaction has been proposed. Rationally based on the model called "transitional nucleation" which pre-requires base-pairs from position 2 to the pivot (position 6) with targets, we developed a simple chemical modification which completely eliminates miRNA-like off-target repression (0%), achieved by substituting a nucleotide in pivot with abasic spacers (dSpacer or C3 spacer), which potentially destabilize the transitional nucleation. Furthermore, by alleviating steric hindrance in the complex with Argonaute (Ago), abasic pivot substitution also preserves near-perfect on-target activity (~80-100%). Abasic pivot substitution offers a general means of harnessing target specificity of siRNAs to experimental and clinical applications where misleading and deleterious phenotypes from off-target repression must be considered. [BMB Reports 2016; 49(3): 135-136].

摘要

小干扰RNA(siRNAs)已被开发出来,通过引导RNA诱导沉默复合体(RISC)来有意抑制特定基因的表达,这一过程模仿了内源性基因沉默子——微小RNA(miRNAs)。尽管siRNA被设计为与预期的靶mRNA完全互补,但它也会通过miRNAs识别靶标的方式抑制数百个脱靶基因。到目前为止,尽管已经提出了类似miRNA的相互作用模式,但尚无有效的方法来避免这种脱靶抑制。基于称为“过渡成核”的模型(该模型预先要求从第2位到枢轴位置(第6位)与靶标形成碱基对),我们开发了一种简单的化学修饰方法,该方法完全消除了类似miRNA的脱靶抑制(0%),方法是用无碱基间隔物(dSpacer或C3间隔物)取代枢轴位置的一个核苷酸,这可能会破坏过渡成核的稳定性。此外,通过减轻与Argonaute(Ago)形成的复合物中的空间位阻,无碱基枢轴取代还保留了近乎完美的靶向活性(约80-100%)。无碱基枢轴取代为将siRNAs的靶标特异性应用于实验和临床应用提供了一种通用方法,在这些应用中,必须考虑脱靶抑制产生的误导性和有害表型。[《BMB报告》2016年;49(3):135-136]

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/cce2/4915226/adcfddc10500/BMB-49-135-g001.jpg

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