Croll Tristan I, Smith Brian J, Margetts Mai B, Whittaker Jonathan, Weiss Michael A, Ward Colin W, Lawrence Michael C
Institute of Health and Biomedical Innovation, Queensland University of Technology, QLD 4059, Australia.
La Trobe Institute for Molecular Science, La Trobe University, Melbourne, VIC 3086, Australia.
Structure. 2016 Mar 1;24(3):469-76. doi: 10.1016/j.str.2015.12.014. Epub 2016 Feb 12.
Insulin receptor (IR) signaling is critical to controlling nutrient uptake and metabolism. However, only a low-resolution (3.8 Å) structure currently exists for the IR ectodomain, with some segments ill-defined or unmodeled due to disorder. Here, we revise this structure using new diffraction data to 3.3 Å resolution that allow improved modeling of the N-linked glycans, the first and third fibronectin type III domains, and the insert domain. A novel haptic interactive molecular dynamics strategy was used to aid fitting to low-resolution electron density maps. The resulting model provides a foundation for investigation of structural transitions in IR upon ligand binding.
胰岛素受体(IR)信号传导对于控制营养物质摄取和代谢至关重要。然而,目前IR胞外域仅存在低分辨率(3.8 Å)结构,由于结构紊乱,一些片段定义不明确或未建模。在此,我们使用新的衍射数据将结构分辨率提高到3.3 Å,从而改进了对N-连接聚糖、第一个和第三个纤连蛋白III型结构域以及插入结构域的建模。我们采用了一种新颖的触觉交互分子动力学策略来辅助拟合低分辨率电子密度图。所得模型为研究配体结合后IR的结构转变提供了基础。