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用Ortho-7使塔崩抑制的突变型乙酰胆碱酯酶复活:定向分子动力学和量子化学研究

The reactivation of tabun-inhibited mutant AChE with Ortho-7: steered molecular dynamics and quantum chemical studies.

作者信息

Lo Rabindranath, Chandar Nellore Bhanu, Ghosh Shibaji, Ganguly Bishwajit

机构信息

Computation and Simulation Unit (Analytical Division and Centralized Instrument Facility), CSIR-Central Salt & Marine Chemicals Research Institute, Bhavnagar, Gujarat, India-364 002.

出版信息

Mol Biosyst. 2016 Apr;12(4):1224-31. doi: 10.1039/c5mb00735f. Epub 2016 Feb 16.

Abstract

A highly toxic nerve agent, tabun, can inhibit acetylcholinesterase (AChE) at cholinergic sites, which leads to serious cardiovascular complications, respiratory compromise and death. We have examined the structural features of the tabun-conjugated AChE complex with an oxime reactivator, Ortho-7, to provide a strategy for designing new and efficient reactivators. Mutation of mAChE within the choline binding site by Y337A and F338A and its interaction with Ortho-7 has been investigated using steered molecular dynamics (SMD) and quantum chemical methods. The overall study shows that after mutagenesis (Y337A), the reactivator can approach more freely towards the phosphorylated active site of serine without any significant steric hindrance in the presence of tabun compared to the wild type and double mutant. Furthermore, the poor binding of Ortho-7 with the peripheral residues of mAChE in the case of the single mutant compared to that of the wild-type and double mutant (Y337A/F338A) can contribute to better efficacy in the former case. Ortho-7 has formed a greater number of hydrogen bonds with the active site surrounding residues His447 and Phe295 in the case of the single mutant (Y337A), and that stabilizes the drug molecule for an effective reactivation process. The DFT M05-2X/6-31+G(d) level of theory shows that the binding energy of Ortho-7 with the single mutant (Y337A) is energetically more preferred (-19.8 kcal mol(-1)) than the wild-type (-8.1 kcal mol(-1)) and double mutant (Y337A/F338A) (-16.0 kcal mol(-1)). The study reveals that both the orientation of the oxime reactivator for nucleophilic attack and the stabilization of the reactivator at the active site would be crucial for the design of an efficient reactivator.

摘要

塔崩是一种剧毒神经毒剂,可抑制胆碱能位点的乙酰胆碱酯酶(AChE),从而导致严重的心血管并发症、呼吸功能障碍甚至死亡。我们研究了塔崩与肟类重活化剂Ortho-7结合的乙酰胆碱酯酶复合物的结构特征,以提供设计新型高效重活化剂的策略。利用引导分子动力学(SMD)和量子化学方法研究了胆碱结合位点内mAChE的Y337A和F338A突变及其与Ortho-7的相互作用。整体研究表明,诱变(Y337A)后,与野生型和双突变体相比,在存在塔崩的情况下,重活化剂可以更自由地接近丝氨酸的磷酸化活性位点,而没有任何明显的空间位阻。此外,与野生型和双突变体(Y337A/F338A)相比,单突变体情况下Ortho-7与mAChE外周残基的结合较差,这可能导致前者具有更好的疗效。在单突变体(Y337A)情况下,Ortho-7与活性位点周围残基His447和Phe295形成了更多的氢键,这使药物分子稳定,从而实现有效的重活化过程。密度泛函理论(DFT)的M05-2X/6-31+G(d)水平表明,Ortho-7与单突变体(Y337A)的结合能(-19.8 kcal mol-1)在能量上比野生型(-8.1 kcal mol-1)和双突变体(Y337A/F338A)(-16.0 kcal mol-1)更有利。该研究表明,肟类重活化剂亲核攻击的方向以及重活化剂在活性位点的稳定性对于设计高效重活化剂至关重要。

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