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木瓜蛋白酶超家族的一个特殊成员:用半胱天冬酶抑制剂绘制小皮伞凝集素(MOA)的催化裂隙

An Unusual Member of the Papain Superfamily: Mapping the Catalytic Cleft of the Marasmius oreades agglutinin (MOA) with a Caspase Inhibitor.

作者信息

Cordara Gabriele, van Eerde André, Grahn Elin M, Winter Harry C, Goldstein Irwin J, Krengel Ute

机构信息

Department of Chemistry, University of Oslo, Oslo, Norway.

Department of Biochemistry, Institute for Cancer Research, The Norwegian Radium Hospital, Oslo, Norway.

出版信息

PLoS One. 2016 Feb 22;11(2):e0149407. doi: 10.1371/journal.pone.0149407. eCollection 2016.

Abstract

Papain-like cysteine proteases (PLCPs) constitute the largest group of thiol-based protein degrading enzymes and are characterized by a highly conserved fold. They are found in bacteria, viruses, plants and animals and involved in a number of physiological and pathological processes, parasitic infections and host defense, making them interesting targets for drug design. The Marasmius oreades agglutinin (MOA) is a blood group B-specific fungal chimerolectin with calcium-dependent proteolytic activity. The proteolytic domain of MOA presents a unique structural arrangement, yet mimicking the main structural elements in known PLCPs. Here we present the X-ray crystal structure of MOA in complex with Z-VAD-fmk, an irreversible caspase inhibitor known to cross-react with PLCPs. The structural data allow modeling of the substrate binding geometry and mapping of the fundamental enzyme-substrate interactions. The new information consolidates MOA as a new, yet strongly atypical member of the papain superfamily. The reported complex is the first published structure of a PLCP in complex with the well characterized caspase inhibitor Z-VAD-fmk.

摘要

木瓜蛋白酶样半胱氨酸蛋白酶(PLCPs)是最大的一类基于硫醇的蛋白质降解酶,其特征是具有高度保守的折叠结构。它们存在于细菌、病毒、植物和动物中,参与许多生理和病理过程、寄生虫感染及宿主防御,这使其成为药物设计的有趣靶点。奥氏小皮伞凝集素(MOA)是一种具有钙依赖性蛋白水解活性的B血型特异性真菌嵌合凝集素。MOA的蛋白水解结构域呈现出独特的结构排列,但模仿了已知PLCPs中的主要结构元件。在此,我们展示了MOA与Z-VAD-fmk(一种已知可与PLCPs发生交叉反应的不可逆半胱天冬酶抑制剂)形成的复合物的X射线晶体结构。结构数据有助于对底物结合几何结构进行建模,并绘制基本的酶-底物相互作用图谱。这些新信息巩固了MOA作为木瓜蛋白酶超家族一个新的但极具非典型性成员的地位。所报道的复合物是首个发表的PLCP与特征明确的半胱天冬酶抑制剂Z-VAD-fmk形成的复合物结构。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/36ba/4764322/6af3831a1923/pone.0149407.g001.jpg

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