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念珠菌感染的组学视角:迈向新一代诊断与治疗

An Omics Perspective on Candida Infections: Toward Next-Generation Diagnosis and Therapy.

作者信息

Smeekens S P, van de Veerdonk F L, Netea M G

机构信息

Internal Medicine, Radboud University Medical Center Nijmegen, Netherlands.

出版信息

Front Microbiol. 2016 Feb 16;7:154. doi: 10.3389/fmicb.2016.00154. eCollection 2016.

DOI:10.3389/fmicb.2016.00154
PMID:26909070
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4754423/
Abstract

Candida species can cause severe infections associated with high morbidity and mortality. Therefore, it is essential to gain more insight into the anti-fungal host defense response. The advent of omics technology and development of advanced systems biology tools has permitted to approach this in an unbiased and quantitative manner. This review summarizes the insights gained on anti-Candida immunity from genetic-, transcriptome-, proteome-, metabolome-, microbiome-, mycobiome-, and computational systems biology studies and discusses practical aspects and future perspectives.

摘要

念珠菌属可引起与高发病率和死亡率相关的严重感染。因此,深入了解抗真菌宿主防御反应至关重要。组学技术的出现和先进系统生物学工具的发展使得能够以无偏见和定量的方式来研究这一问题。本综述总结了从遗传、转录组、蛋白质组、代谢组、微生物组、真菌组和计算系统生物学研究中获得的关于抗念珠菌免疫的见解,并讨论了实际应用方面和未来前景。

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本文引用的文献

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Manipulation of Host Diet To Reduce Gastrointestinal Colonization by the Opportunistic Pathogen Candida albicans.通过控制宿主饮食减少机会致病菌白色念珠菌在胃肠道的定植
mSphere. 2015 Nov 18;1(1). doi: 10.1128/mSphere.00020-15. eCollection 2016 Jan-Feb.
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Invasive Candidiasis.侵袭性念珠菌病
N Engl J Med. 2015 Oct 8;373(15):1445-56. doi: 10.1056/NEJMra1315399.
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SHIP-1 Couples to the Dectin-1 hemITAM and Selectively Modulates Reactive Oxygen Species Production in Dendritic Cells in Response to Candida albicans.SHIP-1与Dectin-1半免疫受体酪氨酸激活基序结合,并在树突状细胞中响应白色念珠菌选择性调节活性氧的产生。
Int J Mol Sci. 2016 Oct 18;17(10):1643. doi: 10.3390/ijms17101643.
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Immune defence against Candida fungal infections.针对念珠菌真菌感染的免疫防御。
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Integrated inference and evaluation of host-fungi interaction networks.宿主-真菌相互作用网络的综合推理与评估
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Host-pathogen interactions between the human innate immune system and Candida albicans-understanding and modeling defense and evasion strategies.人类固有免疫系统与白色念珠菌之间的宿主-病原体相互作用——理解并模拟防御与逃避策略
Front Microbiol. 2015 Jun 30;6:625. doi: 10.3389/fmicb.2015.00625. eCollection 2015.
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Bottom-up modeling approach for the quantitative estimation of parameters in pathogen-host interactions.用于病原体-宿主相互作用中参数定量估计的自下而上建模方法。
Front Microbiol. 2015 Jun 19;6:608. doi: 10.3389/fmicb.2015.00608. eCollection 2015.
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A review on computational systems biology of pathogen-host interactions.病原体-宿主相互作用的计算系统生物学综述。
Front Microbiol. 2015 Apr 9;6:235. doi: 10.3389/fmicb.2015.00235. eCollection 2015.
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Biomarker-based classification of bacterial and fungal whole-blood infections in a genome-wide expression study.基于基因组表达研究的细菌性和真菌性全血感染的生物标志物分类。
Front Microbiol. 2015 Mar 11;6:171. doi: 10.3389/fmicb.2015.00171. eCollection 2015.
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Computational prediction of molecular pathogen-host interactions based on dual transcriptome data.基于双转录组数据的分子病原体-宿主相互作用的计算预测
Front Microbiol. 2015 Feb 6;6:65. doi: 10.3389/fmicb.2015.00065. eCollection 2015.