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烃类分子中原子结构从前分子电子密度中可重现的程度如何?

To What Extent are "Atoms in Molecules" Structures of Hydrocarbons Reproducible from the Promolecule Electron Densities?

作者信息

Keyvani Zahra Alimohammadi, Shahbazian Shant, Zahedi Mansour

机构信息

Faculty of Chemistry, Department of Pure Chemistry, Shahid Beheshti University, G. C., Evin, Tehran, 19839, P.O. Box 19395-4716, Iran.

出版信息

Chemistry. 2016 Mar 24;22(14):5003-9. doi: 10.1002/chem.201504862. Epub 2016 Feb 23.

Abstract

The "atoms in molecules" structures of 225 unsubstituted hydrocarbons are derived from both the optimized and the promolecule electron densities. A comparative analysis demonstrates that the molecular graphs derived from these two types of electron densities at the same geometry are equivalent for almost 90 % of the hydrocarbons containing the same number and types of critical points. For the remaining 10 % of molecules, it is demonstrated that by inducing small perturbations, through the variation of the used basis set or slight changes in the used geometry, the emerging molecular graphs from both densities are also equivalent. Interestingly, the (3, -1) critical point between two "non-bonded" hydrogen atoms, which triggered "H-H bonding" controversy is also observed in the promolecule densities of certain hydrocarbons. Evidently, the topology of the electron density is not dictated by chemical bonds or strong interactions and deformations induced by the interactions of atoms in molecules have a quite marginal role, virtually null, in shaping the general traits of the topology of molecular electron densities of the studied hydrocarbons, whereas the key factor is the underlying atomic densities.

摘要

225种未取代烃类的“分子中的原子”结构源自优化电子密度和前分子电子密度。对比分析表明,对于几乎90%具有相同数量和类型临界点的烃类,在相同几何构型下由这两种电子密度导出的分子图是等效的。对于其余10%的分子,研究表明,通过改变所用基组或略微改变所用几何构型来引入小的微扰,由这两种密度产生的分子图也是等效的。有趣的是,在某些烃类的前分子密度中也观察到了两个“非键合”氢原子之间的(3, -1)临界点,这引发了“H-H键”的争议。显然,电子密度的拓扑结构并非由化学键或强相互作用决定,分子中原子间相互作用所引起的变形在塑造所研究烃类分子电子密度拓扑结构的一般特征方面作用相当微小,几乎可以忽略不计,而关键因素是潜在的原子密度。

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