Staley Christopher, Sadowsky Michael J
BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, USA.
BioTechnology Institute, University of Minnesota, St. Paul, Minnesota, USA
Appl Environ Microbiol. 2016 Apr 18;82(9):2751-2762. doi: 10.1128/AEM.00247-16. Print 2016 May.
Recent characterization of the bacterial community structure in beach sands has revealed patterns of biogeography similar to those observed in aquatic environments. Studies to date, however, have mainly focused on subtidal sediments from marine beaches. Here, we investigate the bacterial diversity, using Illumina-based sequencing of the V5-V6 region of the 16S rRNA gene, at 11 beaches representing those next to the Great Lakes, Florida, and the Pacific Ocean. The alpha diversity differed significantly among regions (P< 0.0001), while the within-region diversity was more similar. The beta diversity also differed by region (P< 0.001), where freshwater sands had significantly higher abundances of taxa within the Actinobacteria, Betaproteobacteria, and Verrucomicrobia than marine environments. In contrast, marine sands harbored greater abundances of Gamma proteobacteria and Planctomycetes, and those from Florida had more Delta proteobacteria and Firmicutes Marine beaches had significantly different phylogenetic community structures (P ≤ 0.018), but freshwater and Florida beaches showed fewer within-region phylogenetic differences. Furthermore, regionally distinct patterns in taxonomic variation were observed in backshore sands, which had communities distinct from those in nearshore sands (P< 0.001). Sample depth minimally influenced the community composition. The results of this study reveal distinct bacterial community structures in sand on a broad geographic scale but moderate regional similarity and suggest that local variation is primarily related to the distance from the shoreline. This study offers a novel comparison of the bacterial communities in freshwater and marine beach sands and provides an important basis for future comparisons and analyses to elucidate factors affecting microbial ecology in this underexplored environment.
This study presents a large-scale geographic characterization of the bacterial communities present in beach sands. While previous studies have evaluated how environmental factors influence bacterial community composition, few have evaluated bacterial communities in freshwater sands. Furthermore, the use of a consistent methodology to characterize bacterial communities here allowed a novel comparison of communities across geographic regions. We reveal that while the community composition in sands at individual beaches is distinct, beach sands within the same region harbor similar assemblages of bacteria and these assemblages differ greatly between regions. In addition, moisture, associated with distance from the shoreline, strongly influences the bacteria present in sands and more strongly influences the bacteria present than sample depth does. Thus, the data presented here offer an important basis for a broader characterization of the ecology of bacteria in sands, which may also be relevant to public health and resource management initiatives.
最近对海滩沙中细菌群落结构的特征分析揭示了与水生环境中观察到的类似生物地理模式。然而,迄今为止的研究主要集中在海洋海滩的潮下带沉积物。在这里,我们使用基于Illumina的16S rRNA基因V5 - V6区域测序,对代表五大湖、佛罗里达和太平洋附近的11个海滩的细菌多样性进行了调查。各区域间的α多样性差异显著(P < 0.0001),而区域内的多样性更为相似。β多样性也因区域而异(P < 0.001),淡水沙滩中放线菌门、β - 变形菌纲和疣微菌门内的分类单元丰度显著高于海洋环境。相比之下,海洋沙滩中γ - 变形菌纲和浮霉菌门的丰度更高,而佛罗里达沙滩中δ - 变形菌纲和厚壁菌门的丰度更高。海洋沙滩具有显著不同的系统发育群落结构(P ≤ 0.018),但淡水和佛罗里达沙滩在区域内的系统发育差异较小。此外,在后滨沙滩中观察到分类学变异的区域独特模式,其群落与近岸沙滩的群落不同(P < 0.001)。样本深度对群落组成的影响最小。本研究结果揭示了在广泛地理尺度下沙中独特的细菌群落结构,但区域相似度适中,并表明局部变异主要与距海岸线的距离有关。这项研究为淡水和海洋海滩沙中的细菌群落提供了新颖的比较,并为未来阐明影响这一未充分探索环境中微生物生态学因素的比较和分析提供了重要依据。
本研究对海滩沙中存在的细菌群落进行了大规模地理特征分析。虽然先前的研究评估了环境因素如何影响细菌群落组成,但很少有研究评估淡水沙滩中的细菌群落。此外,这里使用一致的方法来表征细菌群落,使得能够对不同地理区域的群落进行新颖的比较。我们发现,虽然各个海滩沙中的群落组成不同,但同一区域内的海滩沙含有相似的细菌组合,并且这些组合在不同区域之间差异很大。此外,与距海岸线的距离相关的湿度对沙中存在的细菌有强烈影响,并且比样本深度对细菌的影响更强。因此,这里呈现的数据为更广泛地表征沙中细菌生态学提供了重要依据,这也可能与公共卫生和资源管理举措相关。