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本文引用的文献

1
Protein purification and crystallization artifacts: The tale usually not told.蛋白质纯化和结晶假象:通常不为人知的故事。
Protein Sci. 2016 Mar;25(3):720-33. doi: 10.1002/pro.2861. Epub 2016 Jan 26.
2
Open access chemical probes for epigenetic targets.用于表观遗传靶点的开放获取化学探针。
Future Med Chem. 2015;7(14):1901-17. doi: 10.4155/fmc.15.127. Epub 2015 Sep 23.
3
Computational approaches to study the effects of small genomic variations.研究小基因组变异影响的计算方法。
J Mol Model. 2015 Oct;21(10):251. doi: 10.1007/s00894-015-2794-y. Epub 2015 Sep 8.
4
A community resource of experimental data for NMR / X-ray crystal structure pairs.一个用于核磁共振/ X射线晶体结构对的实验数据社区资源。
Protein Sci. 2016 Jan;25(1):30-45. doi: 10.1002/pro.2774. Epub 2015 Sep 22.
5
Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification.2015年人类蛋白质组计划的指标:人类蛋白质组研究进展及高可信度蛋白质鉴定指南
J Proteome Res. 2015 Sep 4;14(9):3452-60. doi: 10.1021/acs.jproteome.5b00499. Epub 2015 Jul 30.
6
The Economics of Reproducibility in Preclinical Research.临床前研究中的可重复性经济学
PLoS Biol. 2015 Jun 9;13(6):e1002165. doi: 10.1371/journal.pbio.1002165. eCollection 2015 Jun.
7
Power laws in citation distributions: evidence from Scopus.引文分布中的幂律:来自Scopus的证据。
Scientometrics. 2015;103(1):213-228. doi: 10.1007/s11192-014-1524-z. Epub 2015 Jan 22.
8
PiMS: a data management system for structural proteomics.PiMS:一种用于结构蛋白质组学的数据管理系统。
Methods Mol Biol. 2015;1261:21-34. doi: 10.1007/978-1-4939-2230-7_2.
9
Covering complete proteomes with X-ray structures: a current snapshot.用X射线结构覆盖完整蛋白质组:当前概况
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10
Better and faster: improvements and optimization for mammalian recombinant protein production.更优更快:哺乳动物重组蛋白生产的改进与优化
Curr Opin Struct Biol. 2014 Jun;26:39-43. doi: 10.1016/j.sbi.2014.03.006. Epub 2014 Apr 12.

结构基因组学的影响:首个十五年。

The impact of structural genomics: the first quindecennial.

作者信息

Grabowski Marek, Niedzialkowska Ewa, Zimmerman Matthew D, Minor Wladek

机构信息

Department of Molecular Physiology and Biological Physics, University of Virginia School of Medicine, 1340 Jefferson Park Avenue, Jordan Hall, Room 4223, Charlottesville, VA, 22908, USA.

Jerzy Haber Institute of Catalysis and Surface Chemistry, Polish Academy of Sciences, Niezapominajek 8, 30-239, Kraków, Poland.

出版信息

J Struct Funct Genomics. 2016 Mar;17(1):1-16. doi: 10.1007/s10969-016-9201-5. Epub 2016 Mar 2.

DOI:10.1007/s10969-016-9201-5
PMID:26935210
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4834271/
Abstract

The period 2000-2015 brought the advent of high-throughput approaches to protein structure determination. With the overall funding on the order of $2 billion (in 2010 dollars), the structural genomics (SG) consortia established worldwide have developed pipelines for target selection, protein production, sample preparation, crystallization, and structure determination by X-ray crystallography and NMR. These efforts resulted in the determination of over 13,500 protein structures, mostly from unique protein families, and increased the structural coverage of the expanding protein universe. SG programs contributed over 4400 publications to the scientific literature. The NIH-funded Protein Structure Initiatives alone have produced over 2000 scientific publications, which to date have attracted more than 93,000 citations. Software and database developments that were necessary to handle high-throughput structure determination workflows have led to structures of better quality and improved integrity of the associated data. Organized and accessible data have a positive impact on the reproducibility of scientific experiments. Most of the experimental data generated by the SG centers are freely available to the community and has been utilized by scientists in various fields of research. SG projects have created, improved, streamlined, and validated many protocols for protein production and crystallization, data collection, and functional analysis, significantly benefiting biological and biomedical research.

摘要

2000年至2015年期间,蛋白质结构测定领域迎来了高通量方法。全球范围内的结构基因组学(SG)联盟获得了约20亿美元(以2010年美元计算)的总体资金,开发了用于靶点选择、蛋白质生产、样品制备、结晶以及通过X射线晶体学和核磁共振进行结构测定的流程。这些努力使得测定了超过13500个蛋白质结构,其中大部分来自独特的蛋白质家族,扩大了不断扩展的蛋白质世界的结构覆盖范围。SG项目在科学文献中发表了超过4400篇论文。仅由美国国立卫生研究院资助的蛋白质结构计划就产生了超过2000篇科学出版物,迄今为止已吸引了超过93000次引用。处理高通量结构测定工作流程所需的软件和数据库开发带来了质量更高的结构以及相关数据完整性的提升。有条理且易于获取的数据对科学实验的可重复性产生了积极影响。SG中心生成的大多数实验数据都向公众免费提供,并已被各个研究领域的科学家所利用。SG项目创建、改进、简化并验证了许多蛋白质生产和结晶、数据收集以及功能分析的方案,极大地造福了生物学和生物医学研究。