Schadzek Patrik, Schlingmann Barbara, Schaarschmidt Frank, Lindner Julia, Koval Michael, Heisterkamp Alexander, Ngezahayo Anaclet, Preller Matthias
Institute of Biophysics, Leibniz University Hannover, Germany.
Institute of Biophysics, Leibniz University Hannover, Germany; Division of Pulmonary, Allergy and Critical Care and Sleep Medicine, Department of Medicine and Department of Cell Biology, Emory School of Medicine, Atlanta, GA, USA.
Data Brief. 2016 Feb 13;7:93-9. doi: 10.1016/j.dib.2016.01.067. eCollection 2016 Jun.
The structure of hCx26 derived from the X-ray analysis was used to generate a homology model for hCx46. Interacting connexin molecules were used as starting model for the molecular dynamics (MD) simulation using NAMD and allowed us to predict the dynamic behavior of hCx46wt and the cataract related mutant hCx46N188T as well as two artificial mutants hCx46N188Q and hCx46N188D. Within the 50 ns simulation time the docked complex composed of the mutants dissociate while hCx46wt remains stable. The data indicates that one hCx46 molecule forms 5-7 hydrogen bonds (HBs) with the counterpart connexin of the opposing connexon. These HBs appear essential for a stable docking of the connexons as shown by the simulation of an entire gap junction channel and were lost for all the tested mutants. The data described here are related to the research article entitled "The cataract related mutation N188T in human connexin46 (hCx46) revealed a critical role for residue N188 in the docking process of gap junction channels" (Schadzek et al., 2015) [1].
通过X射线分析得到的人连接蛋白26(hCx26)结构被用于生成人连接蛋白46(hCx46)的同源模型。相互作用的连接蛋白分子被用作使用NAMD进行分子动力学(MD)模拟的起始模型,使我们能够预测hCx46野生型、与白内障相关的突变体hCx46N188T以及两个人工突变体hCx46N188Q和hCx46N188D的动态行为。在50纳秒的模拟时间内,由突变体组成的对接复合物解离,而hCx46野生型保持稳定。数据表明,一个hCx46分子与相对连接子的对应连接蛋白形成5 - 7个氢键(HBs)。如对整个间隙连接通道的模拟所示,这些氢键对于连接子的稳定对接似乎至关重要,并且在所有测试的突变体中都丢失了。这里描述的数据与题为《人类连接蛋白46(hCx46)中与白内障相关的突变N188T揭示了残基N188在间隙连接通道对接过程中的关键作用》的研究文章相关(Schadzek等人,2015年)[1]。