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基于分子对接计算和分子动力学模拟设计高效的分泌型磷脂酶A2的2-氧代酰胺抑制剂

Development of a potent 2-oxoamide inhibitor of secreted phospholipase A2 guided by molecular docking calculations and molecular dynamics simulations.

作者信息

Vasilakaki Sofia, Barbayianni Efrosini, Leonis Georgios, Papadopoulos Manthos G, Mavromoustakos Thomas, Gelb Michael H, Kokotos George

机构信息

Laboratory of Organic Chemistry, Department of Chemistry, National and Kapodistrian University of Athens, Panepistimiopolis, Athens 15771, Greece.

Institute of Biology, Medicinal Chemistry and Biotechnology, National Hellenic Research Foundation, 48 Vas. Constantinou Avenue, Athens 11635, Greece.

出版信息

Bioorg Med Chem. 2016 Apr 15;24(8):1683-95. doi: 10.1016/j.bmc.2016.02.040. Epub 2016 Mar 2.

DOI:10.1016/j.bmc.2016.02.040
PMID:26970660
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5292099/
Abstract

Inhibition of group IIA secreted phospholipase A2 (GIIA sPLA2) has been an important objective for medicinal chemists. We have previously shown that inhibitors incorporating the 2-oxoamide functionality may inhibit human and mouse GIIA sPLA2s. Herein, the development of new potent inhibitors by molecular docking calculations using the structure of the known inhibitor 7 as scaffold, are described. Synthesis and biological evaluation of the new compounds revealed that the long chain 2-oxoamide based on (S)-valine GK241 led to improved activity (IC50=143 nM and 68 nM against human and mouse GIIA sPLA2, respectively). In addition, molecular dynamics simulations were employed to shed light on GK241 potent and selective inhibitory activity.

摘要

抑制IIA族分泌型磷脂酶A2(GIIA sPLA2)一直是药物化学家的重要目标。我们之前已经表明,含有2-氧代酰胺官能团的抑制剂可能会抑制人和小鼠的GIIA sPLA2。在此,描述了以已知抑制剂7的结构为支架,通过分子对接计算开发新型强效抑制剂的过程。新化合物的合成和生物学评价表明,基于(S)-缬氨酸的长链2-氧代酰胺GK241活性有所提高(对人和小鼠GIIA sPLA2的IC50分别为143 nM和68 nM)。此外,还采用了分子动力学模拟来阐明GK241的强效和选择性抑制活性。

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本文引用的文献

1
Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald.使用AMBER在GPU上进行常规微秒级分子动力学模拟。2. 显式溶剂粒子网格埃瓦尔德方法
J Chem Theory Comput. 2013 Sep 10;9(9):3878-88. doi: 10.1021/ct400314y. Epub 2013 Aug 20.
2
Synthetic and natural inhibitors of phospholipases A2: their importance for understanding and treatment of neurological disorders.磷脂酶 A2 的合成和天然抑制剂:它们在理解和治疗神经紊乱中的重要性。
ACS Chem Neurosci. 2015 Jun 17;6(6):814-31. doi: 10.1021/acschemneuro.5b00073. Epub 2015 May 1.
3
A new era of secreted phospholipase A₂.分泌型磷脂酶A₂的新时代。
J Lipid Res. 2015 Jul;56(7):1248-61. doi: 10.1194/jlr.R058123. Epub 2015 Mar 24.
4
Emerging roles of secreted phospholipase A2 enzymes: the 3rd edition.分泌型磷脂酶A2酶的新作用:第3版
Biochimie. 2014 Dec;107 Pt A:105-13. doi: 10.1016/j.biochi.2014.09.003. Epub 2014 Sep 16.
5
Secretory phospholipase A2 enzymes as pharmacological targets for treatment of disease.分泌型磷脂酶 A2 酶作为治疗疾病的药物靶点。
Biochem Pharmacol. 2014 Aug 15;90(4):338-48. doi: 10.1016/j.bcp.2014.05.022. Epub 2014 Jun 4.
6
New potent and selective polyfluoroalkyl ketone inhibitors of GVIA calcium-independent phospholipase A2.新型强效和高选择性的 GVIA 钙非依赖性磷脂酶 A2 的多氟烷基酮抑制剂。
Bioorg Med Chem. 2013 Sep 15;21(18):5823-9. doi: 10.1016/j.bmc.2013.07.010. Epub 2013 Jul 16.
7
Phospholipase A2 inhibitors for the treatment of inflammatory diseases: a patent review (2010--present).磷酸酯酶 A2 抑制剂治疗炎症性疾病的专利研究(2010 年至今)。
Expert Opin Ther Pat. 2013 Mar;23(3):333-44. doi: 10.1517/13543776.2013.754425. Epub 2013 Jan 8.
8
Emerging roles of secreted phospholipase A(2) enzymes: an update.分泌型磷脂酶 A(2)酶的新作用:更新。
Biochimie. 2013 Jan;95(1):43-50. doi: 10.1016/j.biochi.2012.09.007. Epub 2012 Sep 25.
9
Phospholipase A(2) enzymes in metabolic and cardiovascular diseases.代谢和心血管疾病中的磷脂酶 A(2)酶。
Curr Opin Lipidol. 2012 Jun;23(3):235-240. doi: 10.1097/MOL.0b013e328351b439.
10
Phospholipase A2 enzymes: physical structure, biological function, disease implication, chemical inhibition, and therapeutic intervention.磷脂酶A2 酶:物理结构、生物学功能、疾病关联、化学抑制及治疗干预
Chem Rev. 2011 Oct 12;111(10):6130-85. doi: 10.1021/cr200085w. Epub 2011 Sep 12.