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来自小花盾叶薯蓣的山药褪绿坏死花叶病毒全基因组序列

Complete genome sequence of yam chlorotic necrotic mosaic virus from Dioscorea parviflora.

作者信息

Zhang Pengyuan, Peng Jiejun, Guo Huachun, Chen Jianping, Chen Suiyun, Wang Jianguang

机构信息

The Life Science College of Yunnan University, Kunming, 650091, China.

Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.

出版信息

Arch Virol. 2016 Jun;161(6):1715-7. doi: 10.1007/s00705-016-2818-7. Epub 2016 Mar 14.

DOI:10.1007/s00705-016-2818-7
PMID:26973231
Abstract

The complete genome sequence of yam chlorotic necrotic mosaic virus (YCNMV) was determined. It is a monopartite ssRNA 8208 nucleotides in length (excluding the poly(A) tail) and encoding a polyprotein of 2622 amino acids. Sequence analysis showed that the P1 region and some conserved motifs, such as the typical potyvirus aphid-transmission motifs DAG, PTK and KITC, are absent. Phylogenetic analysis based on the complete polyprotein sequences of YCNMV and selected members of the family Potyviridae clearly showed that this virus should be assigned to the genus Macluravirus and suggest that YCNMV is a new member of the genus Macluravirus.

摘要

确定了山药褪绿坏死花叶病毒(YCNMV)的全基因组序列。它是一个单分体ssRNA,长度为8208个核苷酸(不包括poly(A)尾),编码一个由2622个氨基酸组成的多聚蛋白。序列分析表明,P1区域以及一些保守基序,如典型的马铃薯Y病毒属蚜虫传播基序DAG、PTK和KITC不存在。基于YCNMV完整多聚蛋白序列和马铃薯Y病毒科选定成员的系统发育分析清楚地表明,该病毒应归入甘薯潜隐病毒属,并表明YCNMV是甘薯潜隐病毒属的一个新成员。

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引用本文的文献

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Viruses. 2022 Aug 26;14(9):1884. doi: 10.3390/v14091884.
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A Review of Viruses Infecting Yam ( spp.).病毒侵染薯蓣属植物的研究进展
Viruses. 2022 Mar 23;14(4):662. doi: 10.3390/v14040662.
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Molecular Viral Diagnosis and Sanitation of Yam Genetic Resources: Implications for Safe Yam Germplasm Exchange.分子病毒诊断与薯蓣遗传资源净化:对安全薯蓣种质交流的意义。
Viruses. 2020 Sep 29;12(10):1101. doi: 10.3390/v12101101.
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Nanopore-based detection and characterization of yam viruses.基于纳米孔的山药病毒检测与鉴定。
Sci Rep. 2018 Dec 14;8(1):17879. doi: 10.1038/s41598-018-36042-7.
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Genome Announc. 2016 Aug 4;4(4):e00778-16. doi: 10.1128/genomeA.00778-16.