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动粒数据库:一个关于动粒及其相关蛋白的综合在线资源。

KinetochoreDB: a comprehensive online resource for the kinetochore and its related proteins.

作者信息

Li Chen, Androulakis Steve, Buckle Ashley M, Song Jiangning

机构信息

Infection and Immunity Program, Biomedicine Discovery Institute and the Department of Biochemistry and Molecular Biology, Faculty of Medicine, Monash University, Melbourne, Victoria, 3800, Australia.

Monash Bioinformatics Platform, Monash University, Melbourne, Victoria, 3800, Australia.

出版信息

Database (Oxford). 2016 Mar 17;2016. doi: 10.1093/database/baw019. Print 2016.

Abstract

KinetochoreDB is an online resource for the kinetochore and its related proteins. It provides comprehensive annotations on 1554 related protein entries in terms of their amino acid sequence, protein domain context, protein 3D structure, predicted intrinsically disordered region, protein-protein interaction, post-translational modification site, functional domain and key metabolic/signaling pathways, integrating several public databases, computational annotations and experimental results. KinetochoreDB provides interactive and customizable search and data display functions that allow users to interrogate the database in an efficient and user-friendly manner. It uses PSI-BLAST searches to retrieve the homologs of all entries and generate multiple sequence alignments that contain important evolutionary information. This knowledgebase also provides annotations of single point mutations for entries with respect to their pathogenicity, which may be useful for generation of new hypotheses on their functions, as well as follow-up studies of human diseases. Database URL: http://lightning.med.monash.edu/kinetochoreDB2/.

摘要

动粒数据库是一个关于动粒及其相关蛋白质的在线资源。它根据1554个相关蛋白质条目的氨基酸序列、蛋白质结构域背景、蛋白质三维结构、预测的内在无序区域、蛋白质-蛋白质相互作用、翻译后修饰位点、功能结构域以及关键代谢/信号通路,提供了全面的注释,整合了多个公共数据库、计算注释和实验结果。动粒数据库提供交互式和可定制的搜索及数据显示功能,允许用户以高效且用户友好的方式查询数据库。它使用PSI-BLAST搜索来检索所有条目的同源物,并生成包含重要进化信息的多序列比对。这个知识库还针对条目提供了关于其致病性的单点突变注释,这对于生成关于其功能的新假设以及人类疾病的后续研究可能是有用的。数据库网址:http://lightning.med.monash.edu/kinetochoreDB2/

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/866a/4795933/d1d91fe80b7b/baw019f1p.jpg

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