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基因组计划的生命周期:受昆虫基因组计划启发的观点与指南

The life cycle of a genome project: perspectives and guidelines inspired by insect genome projects.

作者信息

Papanicolaou Alexie

机构信息

Hawkesbury Institute for the Environment, University of Western Sydney, Richmond, NSW 2753, Australia.

出版信息

F1000Res. 2016 Jan 5;5:18. doi: 10.12688/f1000research.7559.1. eCollection 2016.

Abstract

Many research programs on non-model species biology have been empowered by genomics. In turn, genomics is underpinned by a reference sequence and ancillary information created by so-called "genome projects". The most reliable genome projects are the ones created as part of an active research program and designed to address specific questions but their life extends past publication. In this opinion paper I outline four key insights that have facilitated maintaining genomic communities: the key role of computational capability, the iterative process of building genomic resources, the value of community participation and the importance of manual curation. Taken together, these ideas can and do ensure the longevity of genome projects and the growing non-model species community can use them to focus a discussion with regards to its future genomic infrastructure.

摘要

许多关于非模式物种生物学的研究项目都因基因组学而得到助力。反过来,基因组学又以所谓“基因组计划”创建的参考序列和辅助信息为基础。最可靠的基因组计划是作为活跃研究项目的一部分创建的,旨在解决特定问题,但其生命周期会延续到论文发表之后。在这篇观点论文中,我概述了有助于维持基因组学界的四个关键见解:计算能力的关键作用、构建基因组资源的迭代过程、社区参与的价值以及人工整理的重要性。综合起来,这些理念能够且确实确保了基因组计划的长久性,不断壮大的非模式物种群体可以利用它们来聚焦关于其未来基因组基础设施的讨论。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/0682/4798206/2f5c4a6ea463/f1000research-5-8139-g0000.jpg

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