Feng Likui, Shou Qingyao, Butcher Rebecca A
Department of Chemistry, University of Florida, Gainesville, FL 32611, U.S.A.
Biochem J. 2016 Jun 1;473(11):1507-21. doi: 10.1042/BCJ20160142. Epub 2016 Mar 23.
L-Rhamnose is a common component of cell-wall polysaccharides, glycoproteins and some natural products in bacteria and plants, but is rare in fungi and animals. In the present study, we identify and characterize a biosynthetic pathway for dTDP-rhamnose in Caenorhabditis elegans that is highly conserved across nematode species. We show that RML-1 activates glucose 1-phosphate (Glc-1-P) in the presence of either dTTP or UTP to yield dTDP-glucose or UDP-glucose, respectively. RML-2 is a dTDP-glucose 4,6-dehydratase, converting dTDP-glucose into dTDP-4-keto-6-deoxyglucose. Using mass spectrometry and NMR spectroscopy, we demonstrate that coincubation of dTDP-4-keto-6-deoxyglucose with RML-3 (3,5-epimerase) and RML-4 (4-keto-reductase) produces dTDP-rhamnose. RML-4 could only be expressed and purified in an active form through co-expression with a co-regulated protein, RML-5, which forms a complex with RML-4. Analysis of the sugar nucleotide pool in C. elegans established the presence of dTDP-rhamnose in vivo Targeting the expression of the rhamnose biosynthetic genes by RNAi resulted in significant reductions in dTDP-rhamnose, but had no effect on the biosynthesis of a closely related sugar, ascarylose, found in the ascaroside pheromones. Therefore, the rhamnose and ascarylose biosynthetic pathways are distinct. We also show that transcriptional reporters for the rhamnose biosynthetic genes are expressed highly in the embryo, in the hypodermis during molting cycles and in the hypodermal seam cells specifically before the molt to the stress-resistant dauer larval stage. These expression patterns suggest that rhamnose biosynthesis may play an important role in hypodermal development or the production of the cuticle or surface coat during molting.
L-鼠李糖是细菌和植物细胞壁多糖、糖蛋白及一些天然产物的常见成分,但在真菌和动物中很少见。在本研究中,我们鉴定并表征了秀丽隐杆线虫中dTDP-鼠李糖的生物合成途径,该途径在整个线虫物种中高度保守。我们发现,在dTTP或UTP存在的情况下,RML-1可激活1-磷酸葡萄糖(Glc-1-P),分别生成dTDP-葡萄糖或UDP-葡萄糖。RML-2是一种dTDP-葡萄糖4,6-脱水酶,可将dTDP-葡萄糖转化为dTDP-4-酮-6-脱氧葡萄糖。通过质谱和核磁共振光谱,我们证明dTDP-4-酮-6-脱氧葡萄糖与RML-3(3,5-表异构酶)和RML-4(4-酮还原酶)共同孵育可产生dTDP-鼠李糖。只有通过与共同调节的蛋白RML-5共表达,RML-4才能以活性形式表达和纯化,RML-5与RML-4形成复合物。对秀丽隐杆线虫糖核苷酸库的分析确定了体内dTDP-鼠李糖的存在。通过RNA干扰靶向鼠李糖生物合成基因的表达,导致dTDP-鼠李糖显著减少,但对在ascaroside信息素中发现的密切相关糖ascarose的生物合成没有影响。因此,鼠李糖和ascarose的生物合成途径是不同的。我们还表明,鼠李糖生物合成基因的转录报告基因在胚胎中、蜕皮周期的皮下组织中以及在抗逆性 dauer幼虫阶段蜕皮前的皮下接缝细胞中高度表达。这些表达模式表明,鼠李糖生物合成可能在皮下发育或蜕皮过程中表皮或表面涂层的产生中起重要作用。