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高效实现含时密度泛函理论的赝谱方法用于大分子激发能的计算。

Highly efficient implementation of pseudospectral time-dependent density-functional theory for the calculation of excitation energies of large molecules.

机构信息

Schrödinger Inc, 120 West 45th Street, Tower 45, 17th Floor, New York, New York, 10036.

Schrödinger Inc, 8910 University Lane, Suite 270, San Diego, California, 92122.

出版信息

J Comput Chem. 2016 Jun 15;37(16):1425-41. doi: 10.1002/jcc.24350. Epub 2016 Mar 25.

Abstract

We have developed and implemented pseudospectral time-dependent density-functional theory (TDDFT) in the quantum mechanics package Jaguar to calculate restricted singlet and restricted triplet, as well as unrestricted excitation energies with either full linear response (FLR) or the Tamm-Dancoff approximation (TDA) with the pseudospectral length scales, pseudospectral atomic corrections, and pseudospectral multigrid strategy included in the implementations to improve the chemical accuracy and to speed the pseudospectral calculations. The calculations based on pseudospectral time-dependent density-functional theory with full linear response (PS-FLR-TDDFT) and within the Tamm-Dancoff approximation (PS-TDA-TDDFT) for G2 set molecules using B3LYP/6-31G*(*) show mean and maximum absolute deviations of 0.0015 eV and 0.0081 eV, 0.0007 eV and 0.0064 eV, 0.0004 eV and 0.0022 eV for restricted singlet excitation energies, restricted triplet excitation energies, and unrestricted excitation energies, respectively; compared with the results calculated from the conventional spectral method. The application of PS-FLR-TDDFT to OLED molecules and organic dyes, as well as the comparisons for results calculated from PS-FLR-TDDFT and best estimations demonstrate that the accuracy of both PS-FLR-TDDFT and PS-TDA-TDDFT. Calculations for a set of medium-sized molecules, including Cn fullerenes and nanotubes, using the B3LYP functional and 6-31G() basis set show PS-TDA-TDDFT provides 19- to 34-fold speedups for Cn fullerenes with 450-1470 basis functions, 11- to 32-fold speedups for nanotubes with 660-3180 basis functions, and 9- to 16-fold speedups for organic molecules with 540-1340 basis functions compared to fully analytic calculations without sacrificing chemical accuracy. The calculations on a set of larger molecules, including the antibiotic drug Ramoplanin, the 46-residue crambin protein, fullerenes up to C540 and nanotubes up to 14×(6,6), using the B3LYP functional and 6-31G() basis set with up to 8100 basis functions show that PS-FLR-TDDFT CPU time scales as N(2.05) with the number of basis functions. © 2016 Wiley Periodicals, Inc.

摘要

我们开发并实现了量子力学软件 Jaguar 中的含时密度泛函理论(TDDFT)的赝谱方法,用于计算受限单重态和受限三重态以及用全线性响应(FLR)或包含赝谱长度标度、赝谱原子修正和赝谱多重网格策略的 Tamm-Dancoff 近似(TDA)的非限制激发能。基于全线性响应(PS-FLR-TDDFT)和 Tamm-Dancoff 近似(PS-TDA-TDDFT)的赝谱时间相关密度泛函理论(PS-TDDFT)的计算对于 G2 数据集分子使用 B3LYP/6-31G*(*)表明,受限单重态激发能、受限三重态激发能和非受限激发能的平均和最大绝对偏差分别为 0.0015 eV 和 0.0081 eV、0.0007 eV 和 0.0064 eV、0.0004 eV 和 0.0022 eV;与传统光谱方法计算的结果相比。PS-FLR-TDDFT 在 OLED 分子和有机染料中的应用以及 PS-FLR-TDDFT 和最佳估计值的结果比较表明,PS-FLR-TDDFT 和 PS-TDA-TDDFT 的准确性。对一系列中等大小的分子,包括 Cn 富勒烯和纳米管,使用 B3LYP 函数和 6-31G()基组的计算表明,对于具有 450-1470 个基函数的 Cn 富勒烯,PS-TDA-TDDFT 提供了 19-34 倍的加速;对于具有 660-3180 个基函数的纳米管,提供了 11-32 倍的加速;对于具有 540-1340 个基函数的有机分子,提供了 9-16 倍的加速,而与没有牺牲化学精度的完全解析计算相比。对于一系列较大的分子,包括抗生素药物 Ramoplanin、46 残基的 crambin 蛋白、多达 C540 的富勒烯和多达 14×(6,6)的纳米管,使用 B3LYP 函数和 6-31G()基组以及多达 8100 个基组的计算表明,PS-FLR-TDDFT 的 CPU 时间与基组数量的 N(2.05)成比例。© 2016 年 Wiley 期刊。

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