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克莱默斯跃迁:利用元动力学从能量扩散到空间扩散

Kramers turnover: From energy diffusion to spatial diffusion using metadynamics.

作者信息

Tiwary Pratyush, Berne B J

机构信息

Department of Chemistry, Columbia University, New York, New York 10027, USA.

出版信息

J Chem Phys. 2016 Apr 7;144(13):134103. doi: 10.1063/1.4944577.

Abstract

We consider the rate of transition for a particle between two metastable states coupled to a thermal environment for various magnitudes of the coupling strength using the recently proposed infrequent metadynamics approach [P. Tiwary and M. Parrinello, Phys. Rev. Lett. 111, 230602 (2013)]. We are interested in understanding how this approach for obtaining rate constants performs as the dynamics regime changes from energy diffusion to spatial diffusion. Reassuringly, we find that the approach works remarkably well for various coupling strengths in the strong coupling regime, and to some extent even in the weak coupling regime.

摘要

我们使用最近提出的非频繁元动力学方法[P. 蒂瓦里和M. 帕里内洛,《物理评论快报》111, 230602 (2013)],考虑了与热环境耦合的粒子在两个亚稳态之间的跃迁速率,其中耦合强度有各种不同的量级。我们感兴趣的是了解这种获取速率常数的方法在动力学机制从能量扩散转变为空间扩散时的表现。令人欣慰的是,我们发现该方法在强耦合 regime 中对于各种耦合强度都表现得非常出色,甚至在某种程度上在弱耦合 regime 中也是如此。

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本文引用的文献

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Spectral gap optimization of order parameters for sampling complex molecular systems.用于复杂分子系统采样的序参量的谱隙优化
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J Chem Theory Comput. 2014 Apr 8;10(4):1420-5. doi: 10.1021/ct500040r. Epub 2014 Mar 10.
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