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一套用于内在无序蛋白质共振归属的高效nD NMR协议。

A Set of Efficient nD NMR Protocols for Resonance Assignments of Intrinsically Disordered Proteins.

作者信息

Wiedemann Christoph, Bellstedt Peter, Häfner Sabine, Herbst Christian, Bordusa Frank, Görlach Matthias, Ohlenschläger Oliver, Ramachandran Ramadurai

机构信息

Institute of Biochemistry/Biotechnology, Martin Luther University Halle-Wittenberg, Kurt-Mothes-Str. 3, 06120, Halle/Saale, Germany.

Faculty of Chemistry and Earth Sciences, Friedrich Schiller University Jena, Humboldstr. 10, 07743, Jena, Germany.

出版信息

Chemphyschem. 2016 Jul 4;17(13):1961-8. doi: 10.1002/cphc.201600155. Epub 2016 Apr 9.

DOI:10.1002/cphc.201600155
PMID:27061973
Abstract

The RF pulse scheme RN[N-CA HEHAHA]NH, which provides a convenient approach to the acquisition of different multidimensional chemical shift correlation NMR spectra leading to backbone resonance assignments, including those of the proline residues of intrinsically disordered proteins (IDPs), is experimentally demonstrated. Depending on the type of correlation data required, the method involves the generation of in-phase ((15) N)(x) magnetisation via different magnetisation transfer pathways such as H→N→CO→N, HA→CA→CO→N, H→N→CA→N and H→CA→N, the subsequent application of (15) N-(13) C(α) heteronuclear Hartmann-Hahn mixing over a period of ≈100 ms, chemical-shift labelling of relevant nuclei before and after the heteronuclear mixing step and amide proton detection in the acquisition dimension. It makes use of the favourable relaxation properties of IDPs and the presence of (1) JCαN and (2) JCαN couplings to achieve efficient correlation of the backbone resonances of each amino acid residue "i" with the backbone amide resonances of residues "i-1" and "i+1". It can be implemented in a straightforward way through simple modifications of the RF pulse schemes commonly employed in protein NMR studies. The efficacy of the approach is demonstrated using a uniformly ((15) N,(13) C) labelled sample of α-synuclein. The different possibilities for obtaining the amino-acid-type information, simultaneously with the connectivity data between the backbone resonances of sequentially neighbouring residues, have also been outlined.

摘要

实验证明了射频脉冲序列RN[N - CA HEHAHA]NH,它为获取不同的多维化学位移相关核磁共振谱提供了一种便捷方法,可用于确定主链共振归属,包括内在无序蛋白质(IDP)中脯氨酸残基的共振归属。根据所需相关数据的类型,该方法通过不同的磁化转移途径产生同相的(¹⁵N)ₓ磁化,如H→N→CO→N、HA→CA→CO→N、H→N→CA→N和H→CA→N,随后在约100 ms的时间段内应用¹⁵N - ¹³Cα异核Hartmann - Hahn混合,在异核混合步骤前后对相关原子核进行化学位移标记,并在采集维度中检测酰胺质子。它利用了IDP有利的弛豫特性以及(¹)J_CαN和(²)J_CαN耦合的存在,以实现每个氨基酸残基“i”的主链共振与残基“i - 1”和“i + 1”的主链酰胺共振的有效关联。通过对蛋白质核磁共振研究中常用的射频脉冲序列进行简单修改,该方法可以直接实现。使用α - 突触核蛋白的均匀(¹⁵N,¹³C)标记样品证明了该方法的有效性。同时还概述了在获得氨基酸类型信息的同时获取相邻顺序残基主链共振之间连接性数据的不同可能性。

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