一种基于六维α质子检测的用于内在无序蛋白质主链归属的APSY实验。
A six-dimensional alpha proton detection-based APSY experiment for backbone assignment of intrinsically disordered proteins.
作者信息
Yao Xuejun, Becker Stefan, Zweckstetter Markus
机构信息
Department for NMR-based Structural Biology, Max Planck Institute for Biophysical Chemistry, 37077, Göttingen, Germany.
出版信息
J Biomol NMR. 2014 Dec;60(4):231-40. doi: 10.1007/s10858-014-9872-9. Epub 2014 Nov 4.
Sequence specific resonance assignment is the prerequisite for the NMR-based analysis of the conformational ensembles and their underlying dynamics of intrinsically disordered proteins. However, rapid solvent exchange in intrinsically disordered proteins often complicates assignment strategies based on HN-detection. Here we present a six-dimensional alpha proton detection-based automated projection spectroscopy (APSY) experiment for backbone assignment of intrinsically disordered proteins. The 6D HCACONCAH APSY correlates the six different chemical shifts, H(α)(i - 1), C(α)(i - 1), C'(i - 1), N(i), Cα(i) and Hα(i). Application to two intrinsically disordered proteins, 140-residue α-synuclein and a 352-residue isoform of Tau, demonstrates that the chemical shift information provided by the 6D HCACONCAH APSY allows efficient backbone resonance assignment of intrinsically disordered proteins.
序列特异性共振归属是基于核磁共振(NMR)分析内在无序蛋白质的构象集合及其潜在动力学的前提条件。然而,内在无序蛋白质中快速的溶剂交换常常使基于HN检测的归属策略变得复杂。在此,我们提出了一种基于六维α质子检测的自动投影光谱(APSY)实验,用于内在无序蛋白质的主链归属。六维HCACONCAH APSY将六种不同的化学位移H(α)(i - 1)、C(α)(i - 1)、C'(i - 1)、N(i)、Cα(i)和Hα(i)关联起来。将其应用于两种内在无序蛋白质,即140个残基的α-突触核蛋白和352个残基的Tau异构体,结果表明六维HCACONCAH APSY提供的化学位移信息能够实现内在无序蛋白质主链共振的高效归属。