• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

采用简化含时密度泛函理论的[16]螺烯的电子圆二色性:超越单结构方法

Electronic Circular Dichroism of [16]Helicene With Simplified TD-DFT: Beyond the Single Structure Approach.

作者信息

Bannwarth Christoph, Seibert Jakob, Grimme Stefan

机构信息

Mulliken Center for Theoretical Chemistry, Institut für Physikalische und Theoretische Chemie der Universität Bonn, Bonn, Germany.

出版信息

Chirality. 2016 May;28(5):365-9. doi: 10.1002/chir.22594. Epub 2016 Apr 12.

DOI:10.1002/chir.22594
PMID:27071653
Abstract

The electronic circular dichroism (ECD) spectrum of the recently synthesized [16]helicene and a derivative comprising two triisopropylsilyloxy protection groups was computed by means of the very efficient simplified time-dependent density functional theory (sTD-DFT) approach. Different from many previous ECD studies of helicenes, nonequilibrium structure effects were accounted for by computing ECD spectra on "snapshots" obtained from a molecular dynamics (MD) simulation including solvent molecules. The trajectories are based on a molecule specific classical potential as obtained from the recently developed quantum chemically derived force field (QMDFF) scheme. The reduced computational cost in the MD simulation due to the use of the QMDFF (compared to ab-initio MD) as well as the sTD-DFT approach make realistic spectral simulations feasible for these compounds that comprise more than 100 atoms. While the ECD spectra of [16]helicene and its derivative computed vertically on the respective gas phase, equilibrium geometries show noticeable differences, these are "washed" out when nonequilibrium structures are taken into account. The computed spectra with two recommended density functionals (ωB97X and BHLYP) and extended basis sets compare very well with the experimental one. In addition we provide an estimate for the missing absolute intensities of the latter. The approach presented here could also be used in future studies to capture nonequilibrium effects, but also to systematically average ECD spectra over different conformations in more flexible molecules. Chirality 28:365-369, 2016. © 2016 Wiley Periodicals, Inc.

摘要

采用高效的简化含时密度泛函理论(sTD-DFT)方法,计算了最近合成的[16]螺烯及其包含两个三异丙基硅氧基保护基团的衍生物的电子圆二色性(ECD)光谱。与之前许多关于螺烯的ECD研究不同,通过在包含溶剂分子的分子动力学(MD)模拟获得的“快照”上计算ECD光谱,考虑了非平衡结构效应。这些轨迹基于从最近开发的量子化学衍生力场(QMDFF)方案获得的分子特定经典势。与从头算MD相比,由于使用QMDFF以及sTD-DFT方法,MD模拟中的计算成本降低,使得对这些包含100多个原子的化合物进行实际光谱模拟成为可能。虽然在各自的气相平衡几何结构上垂直计算的[16]螺烯及其衍生物的ECD光谱显示出明显差异,但当考虑非平衡结构时,这些差异会被“消除”。用两种推荐的密度泛函(ωB97X和BHLYP)和扩展基组计算的光谱与实验光谱非常吻合。此外,我们还对后者缺失的绝对强度进行了估计。本文提出的方法未来也可用于捕捉非平衡效应,还可用于对更灵活分子的不同构象的ECD光谱进行系统平均。《手性》28:365 - 369,2016年。© 2016威利期刊公司。

相似文献

1
Electronic Circular Dichroism of [16]Helicene With Simplified TD-DFT: Beyond the Single Structure Approach.采用简化含时密度泛函理论的[16]螺烯的电子圆二色性:超越单结构方法
Chirality. 2016 May;28(5):365-9. doi: 10.1002/chir.22594. Epub 2016 Apr 12.
2
Origins of Optical Activity in an Oxo-Helicene: Experimental and Computational Studies.氧化并苯中旋光性的起源:实验与计算研究
ACS Omega. 2021 Jan 7;6(3):2420-2428. doi: 10.1021/acsomega.0c06079. eCollection 2021 Jan 26.
3
Vibrational circular dichroism and IR spectral analysis as a test of theoretical conformational modeling for a cyclic hexapeptide.振动圆二色性和红外光谱分析作为一种对环六肽理论构象建模的检验
Chirality. 2008 Nov;20(10):1104-19. doi: 10.1002/chir.20560.
4
Electronic circular dichroism of highly conjugated π-systems: breakdown of the Tamm-Dancoff/configuration interaction singles approximation.高度共轭π体系的电子圆二色性:Tamm-Dancoff/组态相互作用单激发近似的失效
J Phys Chem A. 2015 Apr 16;119(15):3653-62. doi: 10.1021/acs.jpca.5b01680. Epub 2015 Apr 6.
5
A simplified Tamm-Dancoff density functional approach for the electronic excitation spectra of very large molecules.一种用于非常大的分子的电子激发光谱的简化 Tamm-Dancoff 密度泛函方法。
J Chem Phys. 2013 Jun 28;138(24):244104. doi: 10.1063/1.4811331.
6
Electronic circular dichroism of chiral alkenes: B3LYP and CAM-B3LYP calculations.手性烯烃的电子圆二色性:B3LYP和CAM - B3LYP计算
Chirality. 2015 Jan;27(1):23-31. doi: 10.1002/chir.22384. Epub 2014 Oct 6.
7
Electronic Structures and Chiroptical Properties of Post-functionalized Helicene Quinones.后功能化并苯醌的电子结构和手性光学性质
Chemistry. 2016 May 17;22(21):7152-7. doi: 10.1002/chem.201600611. Epub 2016 Apr 23.
8
Simulation of Electronic Circular Dichroism of Nucleic Acids: From the Structure to the Spectrum.核酸的电子圆二色性模拟:从结构到光谱。
Chemistry. 2016 Nov 14;22(47):17011-17019. doi: 10.1002/chem.201602777. Epub 2016 Oct 4.
9
Electronic and vibrational circular dichroism of aromatic amino acids by density functional theory.基于密度泛函理论的芳香族氨基酸的电子圆二色性和振动圆二色性
Chirality. 2006 Aug;18(8):652-61. doi: 10.1002/chir.20277.
10
Revised Absolute Configuration of Sibiricumin A: Substituent Effects in Simplified Model Structures Used for Quantum Mechanical Predictions of Chiroptical Properties.西伯利亚醚A的修订绝对构型:用于手性光学性质量子力学预测的简化模型结构中的取代基效应。
Chirality. 2016 Aug;28(8):612-7. doi: 10.1002/chir.22621. Epub 2016 Jul 18.

引用本文的文献

1
Time-Resolved Circular Dichroism in Molecules: Experimental and Theoretical Advances.分子中的时间分辨圆二色性:实验与理论进展
Molecules. 2024 Aug 27;29(17):4049. doi: 10.3390/molecules29174049.
2
Testing the Simplified Molecular Dynamics Approach to Improve the Reproduction of ECD Spectra and Monitor Aggregation.测试简化分子动力学方法以提高 ECD 光谱的再现性并监测聚集。
Int J Mol Sci. 2024 Jun 12;25(12):6453. doi: 10.3390/ijms25126453.
3
Excited-State Properties for Extended Systems: Efficient Hybrid Density Functional Methods.
扩展体系的激发态性质:高效混合密度泛函方法
J Chem Theory Comput. 2022 Jul 12;18(7):4186-4202. doi: 10.1021/acs.jctc.2c00144. Epub 2022 Jun 27.
4
Impact of Adsorption of Straight Chain Alcohol Molecules on the Optical Properties of Calcite (10.4) Surface.直链醇分子吸附对方解石(10.4)表面光学性质的影响
Nanomaterials (Basel). 2022 Apr 25;12(9):1460. doi: 10.3390/nano12091460.
5
In-Fjord Substitution in Expanded Helicenes: Effects of the Insert on the Inversion Barrier and Helical Pitch.在扩展的轮烷中进行内湾取代:插入物对翻转势垒和螺旋桨距的影响。
Chemistry. 2021 Sep 20;27(53):13358-13366. doi: 10.1002/chem.202102585. Epub 2021 Aug 13.
6
Origins of Optical Activity in an Oxo-Helicene: Experimental and Computational Studies.氧化并苯中旋光性的起源:实验与计算研究
ACS Omega. 2021 Jan 7;6(3):2420-2428. doi: 10.1021/acsomega.0c06079. eCollection 2021 Jan 26.
7
Methodological Survey of Simplified TD-DFT Methods for Fast and Accurate Interpretation of UV-Vis-NIR Spectra of Phthalocyanines.用于快速准确解释酞菁紫外-可见-近红外光谱的简化时域密度泛函理论方法的方法学综述
ACS Omega. 2019 Apr 22;4(4):7265-7284. doi: 10.1021/acsomega.8b03500. eCollection 2019 Apr 30.
8
How and How Much Molecular Conformation Affects Electronic Circular Dichroism: The Case of 1,1-Diarylcarbinols.分子构象如何以及在多大程度上影响电子圆二色性:1,1-二芳基仲醇的情况。
Molecules. 2018 Jan 9;23(1):128. doi: 10.3390/molecules23010128.
9
The application of tailor-made force fields and molecular dynamics for NMR crystallography: a case study of free base cocaine.定制力场和分子动力学在核磁共振晶体学中的应用:以游离碱可卡因为例。
IUCrJ. 2017 Feb 15;4(Pt 2):175-184. doi: 10.1107/S2052252517001415. eCollection 2017 Mar 1.