Department of Translational Hematology Oncology Research, Cleveland Clinic, 9500 Euclid Avenue/R40, Cleveland, Ohio 44195, USA.
Department of Genetics, Case Western Reserve University, 2109 Adelbert Road/BRB, Cleveland, Ohio 44106, USA.
Nat Commun. 2016 Apr 25;7:11428. doi: 10.1038/ncomms11428.
Radiotherapy is not currently informed by the genetic composition of an individual patient's tumour. To identify genetic features regulating survival after DNA damage, here we conduct large-scale profiling of cellular survival after exposure to radiation in a diverse collection of 533 genetically annotated human tumour cell lines. We show that sensitivity to radiation is characterized by significant variation across and within lineages. We combine results from our platform with genomic features to identify parameters that predict radiation sensitivity. We identify somatic copy number alterations, gene mutations and the basal expression of individual genes and gene sets that correlate with the radiation survival, revealing new insights into the genetic basis of tumour cellular response to DNA damage. These results demonstrate the diversity of tumour cellular response to ionizing radiation and establish multiple lines of evidence that new genetic features regulating cellular response after DNA damage can be identified.
放疗目前还不能依据个体患者肿瘤的基因组成来进行。为了确定调控 DNA 损伤后存活的遗传特征,我们在此对来自 533 种不同的基因注释的人类肿瘤细胞系进行了大规模的细胞在辐射暴露后的存活情况的分析。我们发现,对辐射的敏感性在不同的细胞系和同一细胞系内都存在显著的差异。我们将本平台的结果与基因组特征相结合,以确定可预测辐射敏感性的参数。我们鉴定了与辐射存活相关的体细胞拷贝数改变、基因突变以及个别基因和基因集的基础表达,这揭示了肿瘤细胞对 DNA 损伤的反应的遗传基础的新见解。这些结果表明肿瘤细胞对电离辐射的反应具有多样性,并提供了多种证据,表明可以识别调控 DNA 损伤后细胞反应的新遗传特征。