Kumke Katrin, Macas Jiří, Fuchs Jörg, Altschmied Lothar, Kour Jasmeet, Dhar Manoj K, Houben Andreas
Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, Stadt Seeland, Germany.
Cytogenet Genome Res. 2016;148(1):68-73. doi: 10.1159/000444873. Epub 2016 May 13.
B chromosomes are supernumerary dispensable parts of the karyotype which appear in some individuals of some populations in some species. Using advanced sequencing technology, we in silico characterized the high-copy DNA composition of Plantago lagopus with and without B chromosomes. The nuclear genome (2.46 pg/2C) was found to be relatively rich in repetitive sequences, with highly and moderately repeated elements making up 68% of the genome. Besides a centromere-specific marker, we identified a B-specific satellite and a repeat enriched in polymorphic A chromosome segments. The B-specific tandem repeat PLsatB originated from sequence amplification including 5S rDNA fragments.
B染色体是核型中额外的、可有可无的部分,出现在某些物种的一些种群的部分个体中。利用先进的测序技术,我们通过计算机对有无B染色体的海滨车前草的高拷贝DNA组成进行了表征。发现其核基因组(2.46 pg/2C)相对富含重复序列,高度和中度重复元件占基因组的68%。除了一个着丝粒特异性标记外,我们还鉴定出一个B特异性卫星序列和一个在多态性A染色体区段中富集的重复序列。B特异性串联重复序列PLsatB起源于包括5S rDNA片段在内的序列扩增。