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无模式的情况下,草蜢 Abracris flavolineata 的常染色 B 染色体并不富含高拷贝重复序列。

Out of patterns, the euchromatic B chromosome of the grasshopper Abracris flavolineata is not enriched in high-copy repeats.

机构信息

Departamento de Biologia Geral e Aplicada, UNESP - Univ Estadual Paulista, Instituto de Biociências/IB, Rio Claro, São Paulo, Brazil.

Evolutionary Biology Centre, Department of Organismal Biology - Systematic Biology, Uppsala University, Uppsala, Sweden.

出版信息

Heredity (Edinb). 2021 Nov;127(5):475-483. doi: 10.1038/s41437-021-00470-5. Epub 2021 Sep 4.

Abstract

In addition to the normal set of standard (A) chromosomes, some eukaryote species harbor supernumerary (B) chromosomes. In most cases, B chromosomes show differential condensation with respect to A chromosomes and display dark C-bands of heterochromatin, and some of them are highly enriched in repetitive DNA. Here we perform a comprehensive NGS (next-generation sequencing) analysis of the repeatome in the grasshopper Abracris flavolineata aimed at uncovering the molecular composition and origin of its B chromosome. Our results have revealed that this B chromosome shows a DNA repeat content highly similar to the DNA repeat content observed for euchromatic (non-C-banded) regions of A chromosomes. Moreover, this B chromosome shows little enrichment for high-copy repeats, with only a few elements showing overabundance in B-carrying individuals compared to the 0B individuals. Consequently, the few satellite DNAs (satDNAs) mapping on the B chromosome were mostly restricted to its centromeric and telomeric regions, and they displayed much smaller bands than those observed on the A chromosomes. Our data support the intraspecific origin of the B chromosome from the longest autosome by misdivision, isochromosome formation, and additional restructuring, with accumulation of specific repeats in one or both B chromosome arms, yielding a submetacentric B. Finally, the absence of B-specific satDNAs, which are frequent in other species, along with its euchromatic nature, suggest that this B chromosome arose recently and might still be starting a heterochromatinization process. On this basis, it could be a good model to investigate the initial steps of B chromosome evolution.

摘要

除了正常的一套标准(A)染色体外,一些真核生物物种还拥有超数(B)染色体。在大多数情况下,B 染色体与 A 染色体相比表现出不同的浓缩,并且显示出异染色质的暗 C-带,其中一些高度富含重复 DNA。在这里,我们对草蜢 Abracris flavolineata 的重复序列进行了全面的 NGS(下一代测序)分析,旨在揭示其 B 染色体的分子组成和起源。我们的结果表明,这条 B 染色体显示出与 A 染色体的常染色质(非 C-带)区域观察到的 DNA 重复含量高度相似的 DNA 重复含量。此外,这条 B 染色体对高拷贝重复的富集程度较低,只有少数元素在携带 B 染色体的个体中比 0B 个体中过度丰富。因此,映射在 B 染色体上的少数卫星 DNA(satDNA)主要局限于其着丝粒和端粒区域,并且与在 A 染色体上观察到的相比,它们显示出更小的带。我们的数据支持 B 染色体的种内起源是通过错误分裂、等臂染色体形成和额外的重排,从最长的常染色体产生的,在一个或两个 B 染色体臂上积累特定的重复序列,产生亚中着丝粒 B。最后,缺乏 B 特异性 satDNA,这些 satDNA 在其他物种中很常见,以及其常染色质性质,表明这条 B 染色体是最近出现的,可能仍在开始异染色质化过程。在此基础上,它可能是研究 B 染色体进化初始步骤的良好模型。

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