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Cladistics. 2012 Dec;28(6):639-644. doi: 10.1111/j.1096-0031.2012.00408.x. Epub 2012 Jul 3.
2
Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects.测试核糖体16S标记物用于昆虫DNA宏条形码分析的潜力。
PeerJ. 2016 Apr 19;4:e1966. doi: 10.7717/peerj.1966. eCollection 2016.
3
Combined DNA, toxicological and heavy metal analyses provides an auditing toolkit to improve pharmacovigilance of traditional Chinese medicine (TCM).DNA、毒理学和重金属分析相结合,提供了一个审核工具包,以改善中药的药物警戒。
Sci Rep. 2015 Dec 10;5:17475. doi: 10.1038/srep17475.
4
Can DNA-Based Ecosystem Assessments Quantify Species Abundance? Testing Primer Bias and Biomass--Sequence Relationships with an Innovative Metabarcoding Protocol.基于DNA的生态系统评估能否量化物种丰度?使用创新的代谢条形码协议测试引物偏差和生物量与序列的关系。
PLoS One. 2015 Jul 8;10(7):e0130324. doi: 10.1371/journal.pone.0130324. eCollection 2015.
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A next generation semiconductor based sequencing approach for the identification of meat species in DNA mixtures.一种基于下一代半导体的测序方法,用于鉴定DNA混合物中的肉类物种。
PLoS One. 2015 Apr 29;10(4):e0121701. doi: 10.1371/journal.pone.0121701. eCollection 2015.
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Universal and blocking primer mismatches limit the use of high-throughput DNA sequencing for the quantitative metabarcoding of arthropods.通用引物和阻断引物错配限制了高通量DNA测序在节肢动物定量代谢组学中的应用。
Mol Ecol Resour. 2015 Jul;15(4):819-30. doi: 10.1111/1755-0998.12355. Epub 2014 Dec 23.
7
Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling.用于基于16S rRNA的细菌群落分析的Illumina和离子激流下一代测序平台的性能比较
Appl Environ Microbiol. 2014 Dec;80(24):7583-91. doi: 10.1128/AEM.02206-14. Epub 2014 Sep 26.
8
DNA metabarcoding and the cytochrome c oxidase subunit I marker: not a perfect match.DNA 宏条形码与细胞色素 c 氧化酶亚基 I 标记:并非完美匹配。
Biol Lett. 2014 Sep;10(9). doi: 10.1098/rsbl.2014.0562.
9
Biological ingredient analysis of traditional Chinese medicine preparation based on high-throughput sequencing: the story for Liuwei Dihuang Wan.基于高通量测序的中药制剂生物成分分析:六味地黄丸的故事
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10
Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics.通过 DNA 宏系统发生学对热带节肢动物的混合样本进行宏基因组和微生物组的同步评估。
Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8007-12. doi: 10.1073/pnas.1406468111. Epub 2014 May 7.

用于食品和野生动物法医物种鉴定的DNA宏条形码技术进展。

Advances in DNA metabarcoding for food and wildlife forensic species identification.

作者信息

Staats Martijn, Arulandhu Alfred J, Gravendeel Barbara, Holst-Jensen Arne, Scholtens Ingrid, Peelen Tamara, Prins Theo W, Kok Esther

机构信息

RIKILT Wageningen UR, P.O. Box 230, 6700 AE, Wageningen, The Netherlands.

Naturalis Biodiversity Center, Sylviusweg 72, P.O. Box 9517, Leiden, The Netherlands.

出版信息

Anal Bioanal Chem. 2016 Jul;408(17):4615-30. doi: 10.1007/s00216-016-9595-8. Epub 2016 May 13.

DOI:10.1007/s00216-016-9595-8
PMID:27178552
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4909793/
Abstract

Species identification using DNA barcodes has been widely adopted by forensic scientists as an effective molecular tool for tracking adulterations in food and for analysing samples from alleged wildlife crime incidents. DNA barcoding is an approach that involves sequencing of short DNA sequences from standardized regions and comparison to a reference database as a molecular diagnostic tool in species identification. In recent years, remarkable progress has been made towards developing DNA metabarcoding strategies, which involves next-generation sequencing of DNA barcodes for the simultaneous detection of multiple species in complex samples. Metabarcoding strategies can be used in processed materials containing highly degraded DNA e.g. for the identification of endangered and hazardous species in traditional medicine. This review aims to provide insight into advances of plant and animal DNA barcoding and highlights current practices and recent developments for DNA metabarcoding of food and wildlife forensic samples from a practical point of view. Special emphasis is placed on new developments for identifying species listed in the Convention on International Trade of Endangered Species (CITES) appendices for which reliable methods for species identification may signal and/or prevent illegal trade. Current technological developments and challenges of DNA metabarcoding for forensic scientists will be assessed in the light of stakeholders' needs.

摘要

利用DNA条形码进行物种鉴定已被法医科学家广泛采用,作为一种有效的分子工具,用于追踪食品掺假以及分析涉嫌野生动物犯罪事件的样本。DNA条形码技术是一种从标准化区域对短DNA序列进行测序,并与参考数据库进行比对的方法,作为物种鉴定中的分子诊断工具。近年来,在开发DNA宏条形码策略方面取得了显著进展,该策略涉及对DNA条形码进行下一代测序,以同时检测复杂样本中的多个物种。宏条形码策略可用于含有高度降解DNA的加工材料,例如用于鉴定传统药物中的濒危和有害物种。本综述旨在深入了解动植物DNA条形码技术的进展,并从实际应用的角度重点介绍食品和野生动物法医样本DNA宏条形码技术的当前实践和最新发展。特别强调了识别《濒危野生动植物种国际贸易公约》(CITES)附录中所列物种的新进展,可靠的物种鉴定方法可能会对非法贸易发出信号并/或加以阻止。将根据利益相关者的需求评估法医科学家在DNA宏条形码技术方面的当前技术发展和挑战。