Suppr超能文献

用于食品和野生动物法医物种鉴定的DNA宏条形码技术进展。

Advances in DNA metabarcoding for food and wildlife forensic species identification.

作者信息

Staats Martijn, Arulandhu Alfred J, Gravendeel Barbara, Holst-Jensen Arne, Scholtens Ingrid, Peelen Tamara, Prins Theo W, Kok Esther

机构信息

RIKILT Wageningen UR, P.O. Box 230, 6700 AE, Wageningen, The Netherlands.

Naturalis Biodiversity Center, Sylviusweg 72, P.O. Box 9517, Leiden, The Netherlands.

出版信息

Anal Bioanal Chem. 2016 Jul;408(17):4615-30. doi: 10.1007/s00216-016-9595-8. Epub 2016 May 13.

Abstract

Species identification using DNA barcodes has been widely adopted by forensic scientists as an effective molecular tool for tracking adulterations in food and for analysing samples from alleged wildlife crime incidents. DNA barcoding is an approach that involves sequencing of short DNA sequences from standardized regions and comparison to a reference database as a molecular diagnostic tool in species identification. In recent years, remarkable progress has been made towards developing DNA metabarcoding strategies, which involves next-generation sequencing of DNA barcodes for the simultaneous detection of multiple species in complex samples. Metabarcoding strategies can be used in processed materials containing highly degraded DNA e.g. for the identification of endangered and hazardous species in traditional medicine. This review aims to provide insight into advances of plant and animal DNA barcoding and highlights current practices and recent developments for DNA metabarcoding of food and wildlife forensic samples from a practical point of view. Special emphasis is placed on new developments for identifying species listed in the Convention on International Trade of Endangered Species (CITES) appendices for which reliable methods for species identification may signal and/or prevent illegal trade. Current technological developments and challenges of DNA metabarcoding for forensic scientists will be assessed in the light of stakeholders' needs.

摘要

利用DNA条形码进行物种鉴定已被法医科学家广泛采用,作为一种有效的分子工具,用于追踪食品掺假以及分析涉嫌野生动物犯罪事件的样本。DNA条形码技术是一种从标准化区域对短DNA序列进行测序,并与参考数据库进行比对的方法,作为物种鉴定中的分子诊断工具。近年来,在开发DNA宏条形码策略方面取得了显著进展,该策略涉及对DNA条形码进行下一代测序,以同时检测复杂样本中的多个物种。宏条形码策略可用于含有高度降解DNA的加工材料,例如用于鉴定传统药物中的濒危和有害物种。本综述旨在深入了解动植物DNA条形码技术的进展,并从实际应用的角度重点介绍食品和野生动物法医样本DNA宏条形码技术的当前实践和最新发展。特别强调了识别《濒危野生动植物种国际贸易公约》(CITES)附录中所列物种的新进展,可靠的物种鉴定方法可能会对非法贸易发出信号并/或加以阻止。将根据利益相关者的需求评估法医科学家在DNA宏条形码技术方面的当前技术发展和挑战。

相似文献

1
Advances in DNA metabarcoding for food and wildlife forensic species identification.
Anal Bioanal Chem. 2016 Jul;408(17):4615-30. doi: 10.1007/s00216-016-9595-8. Epub 2016 May 13.
4
DNA Sequencing Technologies and DNA Barcoding.
Methods Mol Biol. 2024;2744:139-154. doi: 10.1007/978-1-0716-3581-0_8.
5
Wildlife forensics: A boon for species identification and conservation implications.
Forensic Sci Int. 2020 Dec;317:110530. doi: 10.1016/j.forsciint.2020.110530. Epub 2020 Oct 3.
6
Current issues for mammalian species identification in forensic science: a review.
Int J Legal Med. 2021 Jan;135(1):3-12. doi: 10.1007/s00414-020-02341-w. Epub 2020 Jun 19.
7
Bioinformatic challenges for DNA metabarcoding of plants and animals.
Mol Ecol. 2012 Apr;21(8):1834-47. doi: 10.1111/j.1365-294X.2012.05550.x.
8
Species identification through DNA "barcodes".
Genet Test Mol Biomarkers. 2009 Jun;13(3):421-6. doi: 10.1089/gtmb.2008.0144.
9
Current and future directions of DNA in wildlife forensic science.
Forensic Sci Int Genet. 2014 May;10:1-11. doi: 10.1016/j.fsigen.2013.12.007. Epub 2013 Dec 30.
10
Illegal product manufacturing and exportation from Pakistan: Revealing the factuality of highly processed wildlife skin samples via DNA mini-barcoding.
Nucleosides Nucleotides Nucleic Acids. 2018 Mar 4;37(3):179-185. doi: 10.1080/15257770.2018.1450507. Epub 2018 Apr 2.

引用本文的文献

3
Authenticity in bakery products: Detection of pistachio fraud using NGS metabarcoding.
Food Chem (Oxf). 2025 May 5;10:100260. doi: 10.1016/j.fochms.2025.100260. eCollection 2025 Jun.
7
Comparison of commercial DNA kits for allergen detection of celery in food matrices.
Heliyon. 2024 Aug 30;10(17):e36824. doi: 10.1016/j.heliyon.2024.e36824. eCollection 2024 Sep 15.
8
Development of a diagnostic variable number tandem repeat marker and dual TaqMan genotyping assay to distinguish Lophophora species.
Int J Legal Med. 2025 Jan;139(1):1-13. doi: 10.1007/s00414-024-03318-9. Epub 2024 Aug 27.
9
Forensic species identification: practical guide for animal and plant DNA analysis.
Int J Legal Med. 2024 Nov;138(6):2271-2280. doi: 10.1007/s00414-024-03284-2. Epub 2024 Jul 10.
10
Efficient species identification for Pacific salmon genetic monitoring programs.
Evol Appl. 2024 Mar 19;17(3):e13680. doi: 10.1111/eva.13680. eCollection 2024 Mar.

本文引用的文献

1
An update on DNA barcoding: low species coverage and numerous unidentified sequences.
Cladistics. 2012 Dec;28(6):639-644. doi: 10.1111/j.1096-0031.2012.00408.x. Epub 2012 Jul 3.
2
Testing the potential of a ribosomal 16S marker for DNA metabarcoding of insects.
PeerJ. 2016 Apr 19;4:e1966. doi: 10.7717/peerj.1966. eCollection 2016.
5
A next generation semiconductor based sequencing approach for the identification of meat species in DNA mixtures.
PLoS One. 2015 Apr 29;10(4):e0121701. doi: 10.1371/journal.pone.0121701. eCollection 2015.
7
Performance comparison of Illumina and ion torrent next-generation sequencing platforms for 16S rRNA-based bacterial community profiling.
Appl Environ Microbiol. 2014 Dec;80(24):7583-91. doi: 10.1128/AEM.02206-14. Epub 2014 Sep 26.
10
Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics.
Proc Natl Acad Sci U S A. 2014 Jun 3;111(22):8007-12. doi: 10.1073/pnas.1406468111. Epub 2014 May 7.

文献AI研究员

20分钟写一篇综述,助力文献阅读效率提升50倍。

立即体验

用中文搜PubMed

大模型驱动的PubMed中文搜索引擎

马上搜索

文档翻译

学术文献翻译模型,支持多种主流文档格式。

立即体验