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为什么质子会被[NiFe]氢化酶转化为氢化物?基于概念密度泛函理论的本征反应性分析。

Why is a proton transformed into a hydride by [NiFe] hydrogenases? An intrinsic reactivity analysis based on conceptual DFT.

作者信息

Qiu Siyao, Azofra Luis Miguel, MacFarlane Douglas R, Sun Chenghua

机构信息

School of Chemistry, Faculty of Science, Monash University, Clayton, VIC 3800, Australia.

出版信息

Phys Chem Chem Phys. 2016 Jun 1;18(22):15369-74. doi: 10.1039/c6cp00948d.

Abstract

The hydrogen evolution reaction (HER) catalysed by [NiFe] hydrogenases entails a series of chemical events involving great mechanistic interest. In an attempt to understand and delve into the question about 'Why does nature work in that way?', an in-depth intrinsic reactivity analysis based on conceptual DFT has been carried out focusing on the so-called to step, i.e. our work tries to answer how and why the proton attached to the reactive sulphur atom from one of the exo-cyclic cysteine residues is transformed into a bridging hydride to be shared between the Ni/Fe metals in the active site of [NiFe] hydrogenases, which involves not only H migration, but also a change of the charge state on Ni from Ni(i) to Ni(iii). Our DFT results suggest that the transformation is motivated by spontaneous rearrangements of the electron density, and stabilisation comes from the decrease of both electronic activity and electrophilicity index from Ni.

摘要

由[NiFe]氢化酶催化的析氢反应(HER)涉及一系列具有重大机理研究价值的化学事件。为了理解并深入探究“自然为何以这种方式运作?”这一问题,基于概念密度泛函理论(DFT)进行了深入的本征反应性分析,重点关注所谓的第二步,即我们的工作试图回答与外环半胱氨酸残基之一相连的反应性硫原子上附着的质子如何以及为何转化为桥连氢化物,以便在[NiFe]氢化酶活性位点的Ni/Fe金属之间共享,这不仅涉及氢迁移,还涉及镍的电荷状态从Ni(i)变为Ni(iii)。我们的DFT结果表明,这种转化是由电子密度的自发重排驱动的,而稳定性源于镍的电子活性和亲电指数的降低。

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