Department of Applied Physics, Technische Universiteit, Eindhoven, The Netherlands.
Department of Physics, University of Durham, UK.
Soft Matter. 2016 Jun 29;12(26):5708-17. doi: 10.1039/c6sm00489j.
The dense packing of interacting particles on spheres has proved to be a useful model for virus capsids and colloidosomes. Indeed, icosahedral symmetry observed in virus capsids corresponds to potential energy minima that occur for magic numbers of, e.g., 12, 32 and 72 identical Lennard-Jones particles, for which the packing has exactly the minimum number of twelve five-fold defects. It is unclear, however, how stable these structures are against thermal agitation. We investigate this property by means of basin-hopping global optimisation and Langevin dynamics for particle numbers between ten and one hundred. An important measure is the number and type of point defects, that is, particles that do not have six nearest neighbours. We find that small icosahedral structures are the most robust against thermal fluctuations, exhibiting fewer excess defects and rearrangements for a wide temperature range. Furthermore, we provide evidence that excess defects appearing at low non-zero temperatures lower the potential energy at the expense of entropy. At higher temperatures defects are, as expected, thermally excited and thus entropically stabilised. If we replace the Lennard-Jones potential by a very short-ranged (Morse) potential, which is arguably more appropriate for colloids and virus capsid proteins, we find that the same particle numbers give a minimum in the potential energy, although for larger particle numbers these minima correspond to different packings. Furthermore, defects are more difficult to excite thermally for the short-ranged potential, suggesting that the short-ranged interaction further stabilises equilibrium structures.
相互作用的粒子在球体上的密集堆积已被证明是病毒衣壳和胶体蛋白的有用模型。事实上,在病毒衣壳中观察到的二十面体对称性对应于势能极小值,例如,对于 12、32 和 72 个相同的 Lennard-Jones 粒子,其堆积具有完全最小数量的 12 个五重缺陷。然而,这些结构对热扰动的稳定性尚不清楚。我们通过 basin-hopping 全局优化和 Langevin 动力学研究了这种性质,粒子数在 10 到 100 之间。一个重要的衡量标准是点缺陷的数量和类型,即没有六个最近邻的粒子。我们发现,小的二十面体结构对热波动最稳定,在较宽的温度范围内表现出较少的多余缺陷和重排。此外,我们提供的证据表明,在较低的非零温度下出现的多余缺陷会以牺牲熵为代价降低势能。在较高的温度下,缺陷会像预期的那样被热激发,从而通过熵稳定化。如果我们用更短程的(Morse)势代替 Lennard-Jones 势,这对于胶体和病毒衣壳蛋白可能更合适,我们发现相同的粒子数会在势能中产生最小值,尽管对于更大的粒子数,这些最小值对应于不同的堆积。此外,对于短程势,缺陷更难被热激发,这表明短程相互作用进一步稳定了平衡结构。