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遗传算法与盆地跳跃法用于Si(111)表面重构全局优化的系统比较

Systematic Comparison of Genetic Algorithm and Basin Hopping Approaches to the Global Optimization of Si(111) Surface Reconstructions.

作者信息

Bauer Maximilian N, Probert Matt I J, Panosetti Chiara

机构信息

Department of Physics, University of York, York YO10 5DD, United Kingdom.

Technical University of Munich, Lichtenbergstraße 4, 85748 Garching, Germany.

出版信息

J Phys Chem A. 2022 May 19;126(19):3043-3056. doi: 10.1021/acs.jpca.2c00647. Epub 2022 May 6.

DOI:10.1021/acs.jpca.2c00647
PMID:35522778
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC9126620/
Abstract

We present a systematic study of two widely used material structure prediction methods, the Genetic Algorithm and Basin Hopping approaches to global optimization, in a search for the 3 × 3, 5 × 5, and 7 × 7 reconstructions of the Si(111) surface. The Si(111) 7 × 7 reconstruction is the largest and most complex surface reconstruction known, and finding it is a very exacting test for global optimization methods. In this paper, we introduce a modification to previous Genetic Algorithm work on structure search for periodic systems, to allow the efficient search for surface reconstructions, and present a rigorous study of the effect of the different parameters of the algorithm. We also perform a detailed comparison with the recently improved Basin Hopping algorithm using Delocalized Internal Coordinates. Both algorithms succeeded in either resolving the 3 × 3, 5 × 5, and 7 × 7 DAS surface reconstructions or getting "sufficiently close", i.e., identifying structures that only differ for the positions of a few atoms as well as thermally accessible structures within /unit area of the global minimum, with = 300 K. Overall, the Genetic Algorithm is more robust with respect to parameter choice and in success rate, while the Basin Hopping method occasionally exhibits some advantages in speed of convergence. In line with previous studies, the results confirm that robustness, success, and speed of convergence of either approach are strongly influenced by how much the trial moves tend to preserve favorable bonding patterns once these appear.

摘要

我们对两种广泛使用的材料结构预测方法——遗传算法和用于全局优化的盆地跳跃方法进行了系统研究,以寻找Si(111)表面的3×3、5×5和7×7重构。Si(111) 7×7重构是已知最大且最复杂的表面重构,找到它对全局优化方法来说是一项非常严格的测试。在本文中,我们对先前关于周期性系统结构搜索的遗传算法工作进行了改进,以实现对表面重构的高效搜索,并对算法不同参数的影响进行了严谨研究。我们还与最近改进的使用离域内坐标的盆地跳跃算法进行了详细比较。两种算法都成功地解析了3×3、5×5和7×7 DAS表面重构,或者“足够接近”,即识别出仅在少数原子位置上不同的结构以及在全局最小值单位面积内300 K时热可及的结构。总体而言,遗传算法在参数选择和成功率方面更稳健,而盆地跳跃方法偶尔在收敛速度上表现出一些优势。与先前的研究一致,结果证实了这两种方法的稳健性、成功率和收敛速度都受到试探移动一旦出现时倾向于保留有利键合模式程度的强烈影响。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a489/9126620/97317c448c6a/jp2c00647_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a489/9126620/21c45ce029fb/jp2c00647_0002.jpg
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https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a489/9126620/97317c448c6a/jp2c00647_0007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a489/9126620/21c45ce029fb/jp2c00647_0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a489/9126620/e5375c2be97e/jp2c00647_0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a489/9126620/9f3150ce800d/jp2c00647_0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a489/9126620/00f528011797/jp2c00647_0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a489/9126620/de6b1e16a32c/jp2c00647_0006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a489/9126620/97317c448c6a/jp2c00647_0007.jpg

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