Graduate School of Pharmaceutical Sciences, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo 113-0033, Japan.
Department of Microbiology and Immunology, Division of Innate Immunity, The Institute of Medical Science, The University of Tokyo, 4-6-1 Shirokanedai, Minato-ku, Tokyo 108-8639, Japan.
Nat Commun. 2016 Jun 10;7:11813. doi: 10.1038/ncomms11813.
Nucleotide-binding oligomerization domain-containing protein 2 (NOD2), a member of the NOD-like receptors family, are crucial for innate immune responses. Mutations of NOD2 have been associated with chronic inflammatory disorders such as Crohn's disease (CD), Blau syndrome (BS) and early-onset sarcoidosis (EOS), but little is known about its signalling mechanism and the role it plays in these diseases. Here, we report the crystal structure of rabbit NOD2 in an ADP-bound state. The structure reveals an inactive closed conformation in which the subdomains in the NOD domain are closely packed by ADP-mediated and inter-domain interactions. Mapping of the BS- or EOS-associated gain-of-function mutations reveals that most of these mutations are located in the NOD subdomain interfaces, and are likely to disrupt the inner domain interactions, facilitating a conformational change to the active form. Conversely, mutations associated with CD are distributed throughout the protein, some of which may affect oligomer formation and ligand binding.
核苷酸结合寡聚化结构域蛋白 2(NOD2)是 NOD 样受体家族的成员,对于先天免疫反应至关重要。NOD2 的突变与慢性炎症性疾病有关,如克罗恩病(CD)、布卢综合征(BS)和早发性类肉瘤(EOS),但其信号机制及其在这些疾病中的作用知之甚少。在这里,我们报告了兔 NOD2 在 ADP 结合状态下的晶体结构。该结构揭示了一种无活性的封闭构象,其中 NOD 结构域的亚结构域通过 ADP 介导和结构域间相互作用紧密堆积。BS 或 EOS 相关的获得性功能突变的定位表明,这些突变大多位于 NOD 亚结构域界面,可能破坏内部结构域相互作用,促进向活性形式的构象变化。相反,与 CD 相关的突变分布在整个蛋白质中,其中一些可能影响寡聚体形成和配体结合。