Suzuki Masako, Maekawa Ryo, Patterson Nicole E, Reynolds David M, Calder Brent R, Reznik Sandra E, Heo Hye J, Einstein Francine Hughes, Greally John M
Center for Epigenomics, Department of Genetics, Albert Einstein College of Medicine, 1301 Morris Park Avenue, Bronx, NY 10461 USA.
Center for Epigenomics, Department of Genetics, Albert Einstein College of Medicine, 1301 Morris Park Avenue, Bronx, NY 10461 USA ; Department of Obstetrics and Gynecology, Yamaguchi University Graduate School of Medicine, Minamikogushi 1-1-1, Ube, 755-8505 Japan.
Clin Epigenetics. 2016 Jun 10;8:67. doi: 10.1186/s13148-016-0234-1. eCollection 2016.
Preeclampsia, traditionally characterized by high blood pressure and proteinuria, is a common pregnancy complication, which affects 2-8 % of all pregnancies. Although children born to women with preeclampsia have a higher risk of hypertension in later life, the mechanism of this increased risk is unknown. DNA methylation is an epigenetic modification that has been studied as a mediator of cellular memory of adverse exposures in utero. Since each cell type in the body has a unique DNA profile, cell subtype composition is a major confounding factor in studies of tissues with heterogeneous cell types. The best way to avoid this confounding effect is by using purified cell types. However, using purified cell types in large cohort translational studies is difficult. The amnion, the inner layer of the fetal membranes of the placenta, is derived from the epiblast and consists of two cell types, which are easy to isolate from the delivered placenta. In this study, we demonstrate the value of using amnion samples for DNA methylation studies, revealing distinctive patterns between fetuses exposed to proteinuria or hypertension and fetuses from normal pregnancies.
We performed a genome-wide DNA methylation analysis, HpaII tiny fragment Enrichment by Ligation-mediated PCR (HELP)-tagging, on 62 amnion samples from the placentas of uncomplicated, normal pregnancies and from those with complications of preeclampsia or hypertension. Using a regression model approach, we found 123, 85, and 99 loci with high-confidence hypertension-associated, proteinuria-associated, and hypertension- and proteinuria-associated DNA methylation changes, respectively. A gene ontology analysis showed DNA methylation changes to be selecting genes with different biological processes in exposure status. We also found that these differentially methylated regions overlap loci previously reported as differentially methylated regions in preeclampsia.
Our findings support prior observations that preeclampsia is associated with changes of DNA methylation near genes that have previously been found to be dysregulated in preeclampsia. We propose that amniotic membranes represent a valuable surrogate fetal tissue on which to perform epigenome-wide association studies of adverse intrauterine conditions.
子痫前期传统上以高血压和蛋白尿为特征,是一种常见的妊娠并发症,影响所有妊娠的2% - 8%。虽然子痫前期女性所生的孩子在以后的生活中患高血压的风险较高,但这种风险增加的机制尚不清楚。DNA甲基化是一种表观遗传修饰,已被作为子宫内不良暴露的细胞记忆介质进行研究。由于体内每种细胞类型都有独特的DNA图谱,细胞亚型组成是研究具有异质细胞类型的组织时的一个主要混杂因素。避免这种混杂效应的最佳方法是使用纯化的细胞类型。然而,在大型队列转化研究中使用纯化的细胞类型很困难。羊膜是胎盘胎膜的内层,来源于上胚层,由两种细胞类型组成,易于从分娩后的胎盘中分离出来。在本研究中,我们证明了使用羊膜样本进行DNA甲基化研究的价值,揭示了暴露于蛋白尿或高血压的胎儿与正常妊娠胎儿之间的独特模式。
我们对来自无并发症的正常妊娠胎盘以及患有子痫前期或高血压并发症的胎盘的62个羊膜样本进行了全基因组DNA甲基化分析,即通过连接介导的PCR(HELP)标记进行HpaII小片段富集。使用回归模型方法,我们分别发现了123个、85个和99个具有高可信度的与高血压相关、与蛋白尿相关以及与高血压和蛋白尿相关的DNA甲基化变化位点。基因本体分析表明,DNA甲基化变化在暴露状态下选择具有不同生物学过程的基因。我们还发现这些差异甲基化区域与先前报道的子痫前期差异甲基化区域重叠。
我们的研究结果支持先前的观察结果,即子痫前期与先前在子痫前期中发现失调的基因附近的DNA甲基化变化有关。我们提出羊膜代表了一种有价值的替代胎儿组织,可用于对不良宫内状况进行全表观基因组关联研究。