Division of Soil and Water Management, KU Leuven, Leuven, Belgium.
Centre of Microbial and Plant Genetics, KU Leuven, Leuven, Belgium.
Environ Microbiol. 2016 Dec;18(12):4878-4887. doi: 10.1111/1462-2920.13409. Epub 2016 Jul 15.
Carbofuran-mineralizing strain Novosphingobium sp. KN65.2 produces the CfdJ enzyme that converts the N-methylcarbamate insecticide to carbofuran phenol. Purified CfdJ shows a remarkably low K towards carbofuran. Together with the carbaryl hydrolase CehA of Rhizobium sp. strain AC100, CfdJ represents a new protein family with several uncharacterized bacterial members outside the proteobacteria. Although both enzymes differ by only four amino acids, CehA does not recognize carbofuran as a substrate whereas CfdJ also hydrolyzes carbaryl. None of the CfdJ amino acids that differ from CehA were shown to be silent regarding carbofuran hydrolytic activity but one particular amino acid substitution, i.e., L152 to F152, proved crucial. CfdJ is more efficient in degrading methylcarbamate pesticides with an aromatic side chain whereas CehA is more efficient in degrading the oxime carbamate nematicide oxamyl. The presence of common flanking sequences suggest that the cfdJ gene is located on a remnant of the mobile genetic element Tnceh carrying cehA. Our results suggest that these enzymes can be acquired through horizontal gene transfer and can evolve to degrade new carbamate substrates by limited amino acid substitutions. We demonstrate that a carbaryl hydrolase can gain the additional capacity to degrade carbofuran by a single nucleotide transversion.
矿化呋喃丹的新鞘氨醇单胞菌 KN65.2 菌株产生 CfdJ 酶,将 N-甲基氨基甲酸酯类杀虫剂转化为呋喃丹酚。纯化的 CfdJ 对呋喃丹表现出极低的亲和力。与 Rhizobium sp. AC100 的卡巴呋喃水解酶 CehA 一起,CfdJ 代表了一个新的蛋白质家族,在变形菌门之外还有几个未被表征的细菌成员。尽管这两种酶仅相差四个氨基酸,但 CehA 不将呋喃丹视为底物,而 CfdJ 也水解卡巴呋喃。与 CehA 不同的 CfdJ 氨基酸都没有对呋喃丹水解活性保持沉默,但一个特定的氨基酸取代,即 L152 到 F152,被证明是至关重要的。CfdJ 更有效地降解具有芳香侧链的甲基氨基甲酸酯类农药,而 CehA 更有效地降解肟氨基甲酸酯类杀线虫剂涕灭威。共同侧翼序列的存在表明 cfdJ 基因位于携带 cehA 的移动遗传元件 Tnceh 的残余物上。我们的结果表明,这些酶可以通过水平基因转移获得,并通过有限的氨基酸取代进化为降解新的氨基甲酸酯底物。我们证明,卡巴呋喃水解酶可以通过单个核苷酸颠换获得额外的降解呋喃丹的能力。