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Genomic Analysis of Immune Cell Infiltrates Across 11 Tumor Types.

作者信息

Iglesia Michael D, Parker Joel S, Hoadley Katherine A, Serody Jonathan S, Perou Charles M, Vincent Benjamin G

机构信息

Affiliations of authors: Lineberger Comprehensive Cancer Center (MDI, JSP, KAH, JSS, CMP, BGV), Curriculum in Genetics and Molecular Biology (MDI, JSP), Department of Medicine (JSS, BGV), Department of Genetics (KAH, CMP), Department of Microbiology and Immunology (JSS), and Department of Pathology & Laboratory Medicine (CMP), University of North Carolina, Chapel Hill, Chapel Hill, NC.

出版信息

J Natl Cancer Inst. 2016 Jun 22;108(11). doi: 10.1093/jnci/djw144. Print 2016 Nov.


DOI:10.1093/jnci/djw144
PMID:27335052
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5241901/
Abstract

BACKGROUND: Immune infiltration of the tumor microenvironment has been associated with improved survival for some patients with solid tumors. The precise makeup and prognostic relevance of immune infiltrates across a broad spectrum of tumors remain unclear. METHODS: Using mRNA sequencing data from The Cancer Genome Atlas (TCGA) from 11 tumor types representing 3485 tumors, we evaluated lymphocyte and macrophage gene expression by tissue type and by genomic subtypes defined within and across tumor tissue of origin (Cox proportional hazards, Pearson correlation). We investigated clonal diversity of B-cell infiltrates through calculating B-cell receptor (BCR) repertoire sequence diversity. All statistical tests were two-sided. RESULTS: High expression of T-cell and B-cell signatures predicted improved overall survival across many tumor types including breast, lung, and melanoma (breast CD8_T_Cells hazard ratio [HR] = 0.36, 95% confidence interval [CI] = 0.16 to 0.81, P = .01; lung adenocarcinoma B_Cell_60gene HR = 0.71, 95% CI = 0.58 to 0.87, P = 7.80E-04; melanoma LCK HR = 0.86, 95% CI = 0.79 to 0.94, P = 6.75E-04). Macrophage signatures predicted worse survival in GBM, as did B-cell signatures in renal tumors (Glioblastoma Multiforme [GBM]: macrophages HR = 1.62, 95% CI = 1.17 to 2.26, P = .004; renal: B_Cell_60gene HR = 1.17, 95% CI = 1.04 to 1.32, P = .009). BCR diversity was associated with survival beyond gene segment expression in melanoma (HR = 2.67, 95% CI = 1.32 to 5.40, P = .02) and renal cell carcinoma (HR = 0.36, 95% CI = 0.15 to 0.87, P = .006). CONCLUSIONS: These data support existing studies suggesting that in diverse tissue types, heterogeneous immune infiltrates are present and typically portend an improved prognosis. In some tumor types, BCR diversity was also associated with survival. Quantitative genomic signatures of immune cells warrant further testing as prognostic markers and potential biomarkers of response to cancer immunotherapy.

摘要

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本文引用的文献

[1]
Genomic Classification of Cutaneous Melanoma.

Cell. 2015-6-18

[2]
PD-1 Blockade in Tumors with Mismatch-Repair Deficiency.

N Engl J Med. 2015-6-25

[3]
Cytotoxic T-lymphocyte antigen-4 blockade in melanoma.

Clin Ther. 2015-4-1

[4]
Cancer immunotherapy: a future paradigm shift in the treatment of non-small cell lung cancer.

Clin Cancer Res. 2015-3-1

[5]
Comprehensive genomic characterization of head and neck squamous cell carcinomas.

Nature. 2015-1-29

[6]
PD-1 blockade therapy in renal cell carcinoma: current studies and future promises.

Cancer Treat Rev. 2015-1-6

[7]
Immunity in head and neck cancer.

Cancer Immunol Res. 2015-1

[8]
Predictive correlates of response to the anti-PD-L1 antibody MPDL3280A in cancer patients.

Nature. 2014-11-27

[9]
MPDL3280A (anti-PD-L1) treatment leads to clinical activity in metastatic bladder cancer.

Nature. 2014-11-27

[10]
Multiplatform analysis of 12 cancer types reveals molecular classification within and across tissues of origin.

Cell. 2014-8-14

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