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可诱导的RasGEF1B环状RNA是TLR4/LPS途径中ICAM-1的正向调节因子。

Inducible RasGEF1B circular RNA is a positive regulator of ICAM-1 in the TLR4/LPS pathway.

作者信息

Ng Wei Lun, Marinov Georgi K, Liau Ee Shan, Lam Yi Lyn, Lim Yat-Yuen, Ea Chee-Kwee

机构信息

a Institute of Biological Sciences, Faculty of Science, University of Malaya , Kuala Lumpur , Malaysia.

b Department of Biology , Indiana University Bloomington , Bloomington , IL , USA.

出版信息

RNA Biol. 2016 Sep;13(9):861-71. doi: 10.1080/15476286.2016.1207036. Epub 2016 Jun 30.

Abstract

Circular RNAs (circRNAs) constitute a large class of RNA species formed by the back-splicing of co-linear exons, often within protein-coding transcripts. Despite much progress in the field, it remains elusive whether the majority of circRNAs are merely aberrant splicing by-products with unknown functions, or their production is spatially and temporally regulated to carry out specific biological functions. To date, the majority of circRNAs have been cataloged in resting cells. Here, we identify an LPS-inducible circRNA: mcircRasGEF1B, which is predominantly localized in cytoplasm, shows cell-type specific expression, and has a human homolog with similar properties, hcircRasGEF1B. We show that knockdown of the expression of mcircRasGEF1B reduces LPS-induced ICAM-1 expression. Additionally, we demonstrate that mcircRasGEF1B regulates the stability of mature ICAM-1 mRNAs. These findings expand the inventory of functionally characterized circRNAs with a novel RNA species that may play a critical role in fine-tuning immune responses and protecting cells against microbial infection.

摘要

环状RNA(circRNAs)是由共线性外显子反向剪接形成的一大类RNA分子,通常存在于蛋白质编码转录本中。尽管该领域已取得很大进展,但大多数circRNAs究竟只是功能未知的异常剪接副产物,还是其产生在空间和时间上受到调控以执行特定生物学功能,仍不清楚。迄今为止,大多数circRNAs是在静息细胞中被编目。在此,我们鉴定出一种脂多糖(LPS)诱导型circRNA:mcircRasGEF1B,它主要定位于细胞质,表现出细胞类型特异性表达,并且有一个具有相似特性的人类同源物hcircRasGEF1B。我们发现,敲低mcircRasGEF1B的表达会降低LPS诱导的细胞间黏附分子-1(ICAM-1)的表达。此外,我们证明mcircRasGEF1B调节成熟ICAM-1 mRNA的稳定性。这些发现通过一种可能在微调免疫反应和保护细胞免受微生物感染中起关键作用的新型RNA分子,扩展了具有功能特征的circRNAs的清单。

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circBase: a database for circular RNAs.circBase:一个环状RNA数据库。
RNA. 2014 Nov;20(11):1666-70. doi: 10.1261/rna.043687.113. Epub 2014 Sep 18.
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Detecting and characterizing circular RNAs.环状RNA的检测与特性分析
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