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光解酶在DNA修复过程中不同电子转移机制的共存。

Coexistence of Different Electron-Transfer Mechanisms in the DNA Repair Process by Photolyase.

作者信息

Lee Wook, Kodali Goutham, Stanley Robert J, Matsika Spiridoula

机构信息

Department of Chemistry, Temple University, Philadelphia, Pennsylvania, 19122, USA.

Teva Pharmaceuticals USA, Inc, 145 Brandywine Pkwy, West Chester, Pennsylvania, 19380, USA.

出版信息

Chemistry. 2016 Aug 1;22(32):11371-81. doi: 10.1002/chem.201600656. Epub 2016 Jun 30.

Abstract

DNA photolyase has been the topic of extensive studies due to its important role of repairing photodamaged DNA, and its unique feature of using light as an energy source. A crucial step in the repair by DNA photolyase is the forward electron transfer from its cofactor (FADH(-) ) to the damaged DNA, and the detailed mechanism of this process has been controversial. In the present study, we examine the forward electron transfer in DNA photolyase by carrying out high-level ab initio calculations in combination with a quantum mechanical/molecular mechanical (QM/MM) approach, and by measuring fluorescence emission spectra at low temperature. On the basis of these computational and experimental results, we demonstrate that multiple decay pathways exist in DNA photolyase depending on the wavelength at excitation and the subsequent transition. This implies that the forward electron transfer in DNA photolyase occurs not only by superexchange mechanism but also by sequential electron transfer.

摘要

DNA光解酶因其在修复光损伤DNA中的重要作用以及利用光作为能源的独特特性,一直是广泛研究的主题。DNA光解酶修复过程中的一个关键步骤是其辅因子(FADH(-))向受损DNA的正向电子转移,而这一过程的详细机制一直存在争议。在本研究中,我们通过结合量子力学/分子力学(QM/MM)方法进行高水平的从头计算,并测量低温下的荧光发射光谱,来研究DNA光解酶中的正向电子转移。基于这些计算和实验结果,我们证明了DNA光解酶中存在多种衰变途径,这取决于激发波长和随后的跃迁。这意味着DNA光解酶中的正向电子转移不仅通过超交换机制发生,还通过顺序电子转移发生。

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