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通过对多个组织RNA测序数据进行荟萃分析来鉴定肺特异性基因。

Identification of lung-specific genes by meta-analysis of multiple tissue RNA-seq data.

作者信息

Xiong Min, Heruth Daniel P, Zhang Li Qin, Ye Shui Qing

机构信息

Division of Experimental and Translational Genetics Department of Pediatrics The Children's Mercy Hospital University of Missouri Kansas City School of Medicine MO USA; Department of Biomedical and Health Informatics University of Missouri Kansas City School of Medicine MO USA.

Division of Experimental and Translational Genetics Department of Pediatrics The Children's Mercy Hospital University of Missouri Kansas City School of Medicine MO USA.

出版信息

FEBS Open Bio. 2016 Jun 16;6(7):774-81. doi: 10.1002/2211-5463.12089. eCollection 2016 Jul.

Abstract

Lung-specific genes play critically important roles in lung development, lung physiology, and pathogenesis of lung-associated diseases. We performed a meta-analysis of multiple tissue RNA-seq data to identify lung-specific genes in order to better investigate their lung-specific functions and pathological roles. We identified 83 lung-specific genes consisting of 62 protein-coding genes, five pseudogenes and 16 noncoding RNA genes. About 49.4% of lung-specific genes were implicated in the pathogenesis of lung diseases and 21.7% were involved with lung development. The identification of genes with enriched expression in the lung will facilitate the elucidation of lung-specific functions and their roles in disease pathogenesis.

摘要

肺特异性基因在肺发育、肺生理学以及肺部相关疾病的发病机制中起着至关重要的作用。我们对多个组织的RNA测序数据进行了荟萃分析,以鉴定肺特异性基因,以便更好地研究它们的肺特异性功能和病理作用。我们鉴定出了83个肺特异性基因,其中包括62个蛋白质编码基因、5个假基因和16个非编码RNA基因。约49.4%的肺特异性基因与肺部疾病的发病机制有关,21.7%与肺发育有关。鉴定出在肺中表达丰富的基因将有助于阐明肺特异性功能及其在疾病发病机制中的作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b3c1/4932457/5405ff9f2e9c/FEB4-6-774-g002.jpg

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