Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, USA.
Global Health Labs, Inc., Bellevue, WA, USA.
Nat Commun. 2024 Jun 10;15(1):4949. doi: 10.1038/s41467-024-49245-6.
Tuberculosis (TB) remains a leading cause of death from an infectious disease worldwide, partly due to a lack of effective strategies to screen and triage individuals with potential TB. Whole blood RNA signatures have been tested as biomarkers for TB, but have failed to meet the World Health Organization's (WHO) optimal target product profiles (TPP). Here, we use RNA sequencing and machine-learning to investigate the utility of plasma cell-free RNA (cfRNA) as a host-response biomarker for TB in cohorts from Uganda, Vietnam and Philippines. We report a 6-gene cfRNA signature, which differentiates TB-positive and TB-negative individuals with AUC = 0.95, 0.92, and 0.95 in test, training and validation, respectively. This signature meets WHO TPPs (sensitivity: 97.1% [95% CI: 80.9-100%], specificity: 85.2% [95% CI: 72.4-100%]) regardless of geographic location, sample collection method and HIV status. Overall, our results identify plasma cfRNA as a promising host response biomarker to diagnose TB.
结核病(TB)仍然是全球传染病死亡的主要原因之一,部分原因是缺乏有效的策略来筛选和甄别有潜在结核病的个体。全血 RNA 标志物已被测试作为结核病的生物标志物,但未能达到世界卫生组织(WHO)的最佳目标产品特征(TPP)。在这里,我们使用 RNA 测序和机器学习来研究血浆无细胞 RNA(cfRNA)作为来自乌干达、越南和菲律宾队列中结核病宿主反应生物标志物的效用。我们报告了一个 6 个基因的 cfRNA 特征,该特征在测试、训练和验证中分别区分 TB 阳性和 TB 阴性个体的 AUC 值为 0.95、0.92 和 0.95。该特征符合 WHO TPP(敏感性:97.1%[95%CI:80.9-100%],特异性:85.2%[95%CI:72.4-100%]),无论地理位置、样本采集方法和 HIV 状况如何。总的来说,我们的结果表明,血浆 cfRNA 是一种很有前途的宿主反应生物标志物,可用于诊断结核病。