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固定的经验阈值可能会高估物种多样性:来自稻绿蝽属(半翅目:缘蝽科)DNA条形码的见解以及对先前系统地理学研究中COI数据的荟萃分析。

Species diversity can be overestimated by a fixed empirical threshold: insights from DNA barcoding of the genus Cletus (Hemiptera: Coreidae) and the meta-analysis of COI data from previous phylogeographical studies.

作者信息

Zhang Hai-Guang, Lv Min-Hua, Yi Wen-Bo, Zhu Wei-Bing, Bu Wen-Jun

机构信息

Institute of Entomology, College of Life Sciences, Nankai University, 94 Weijin Road, Nankai District, Tianjin, 300071, China.

Shanghai Entomological Museum, Institute of Plant Physiology & Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Xuhui District, Shanghai, 200032, China.

出版信息

Mol Ecol Resour. 2017 Mar;17(2):314-323. doi: 10.1111/1755-0998.12571. Epub 2016 Aug 20.

Abstract

The use of genetic distances to identify species within the framework of DNA barcoding has to some extent improved the development of biodiversity studies. However, using a fixed empirical threshold to delimit species may lead to overestimating species diversity. In this study, we use a new data set of COI sequences for 366 specimens within the genus of Cletus as well as conduct an analysis on the same genetic data for collected morphologically defined species from previous phylogeographical studies, to test whether high intraspecific genetic divergences are common with the premises of comprehensive sampling. The results indicate C. graminis Hsiao & Cheng , is the same species with C. punctiger (Dallas, 1852) and should be synonymized and that the distributional record of C. pugnator (Fabricius, 1787) in China is correct. High intraspecific genetic differentiations (0%-4.35%) were found in C. punctiger. Furthermore, as to the mined data, the maximum intraspecific K2P distances of 186 species (48.44% of 384) exceed 3%, and 101 species (26.30%) can be divided into two or more clusters with a threshold of 3% in cluster analysis. If genetic distance is used to delimit species boundaries, the minimum interspecific K2P distance of the congeneric species should be considered rather than only using the fixed empirical value; otherwise, the species richness may be overestimated in some cases.

摘要

在DNA条形码框架下利用遗传距离来识别物种,在一定程度上推动了生物多样性研究的发展。然而,使用固定的经验阈值来界定物种可能会导致对物种多样性的高估。在本研究中,我们使用了蝽属366个标本的COI序列新数据集,并对先前系统地理学研究中收集的形态学定义物种的相同遗传数据进行分析,以检验在全面采样的前提下高种内遗传差异是否常见。结果表明,萧蝽(Cletus graminis Hsiao & Cheng)与点蜂缘蝽(C. punctiger (Dallas, 1852))为同一物种,应予以归并,并且稻棘缘蝽(C. pugnator (Fabricius, 1787))在中国的分布记录是正确的。在点蜂缘蝽中发现了较高的种内遗传分化(0%-4.35%)。此外,对于挖掘的数据,186个物种(占384个物种的48.44%)的最大种内K2P距离超过3%,并且在聚类分析中,101个物种(26.30%)可以在阈值为3%的情况下被分为两个或更多个聚类。如果使用遗传距离来界定物种界限,应该考虑同属物种的最小种间K2P距离,而不是仅使用固定的经验值;否则,在某些情况下可能会高估物种丰富度。

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