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全基因组测序有助于更好地了解问号钩端螺旋体哈焦血清型的进化史。

Whole Genome Sequencing Allows Better Understanding of the Evolutionary History of Leptospira interrogans Serovar Hardjo.

作者信息

Llanes Alejandro, Restrepo Carlos Mario, Rajeev Sreekumari

机构信息

Centro de Biología Celular y Molecular de Enfermedades, Instituto de Investigaciones Científicas y Servicios de Alta Tecnología (INDICASAT AIP), Ciudad del Saber, Panamá, Panamá

Ross University School of Veterinary Medicine, Basseterre, St. Kitts & Nevis.

出版信息

PLoS One. 2016 Jul 21;11(7):e0159387. doi: 10.1371/journal.pone.0159387. eCollection 2016.

Abstract

The genome of a laboratory-adapted strain of Leptospira interrogans serovar Hardjo was sequenced and analyzed. Comparison of the sequenced genome with that recently published for a field isolate of the same serovar revealed relatively high sequence conservation at the nucleotide level, despite the different biological background of both samples. Conversely, comparison of both serovar Hardjo genomes with those of L. borgpetersenii serovar Hardjo showed extensive differences between the corresponding chromosomes, except for the region occupied by their rfb loci. Additionally, comparison of the serovar Hardjo genomes with those of different L. interrogans serovars allowed us to detect several genomic features that may confer an adaptive advantage to L. interrogans serovar Hardjo, including a possible integrated plasmid and an additional copy of a cluster encoding a membrane transport system known to be involved in drug resistance. A phylogenomic strategy was used to better understand the evolutionary position of the Hardjo serovar among L. interrogans serovars and other Leptospira species. The proposed phylogeny supports the hypothesis that the presence of similar rfb loci in two different species may be the result of a lateral gene transfer event.

摘要

对问号钩端螺旋体哈焦血清型实验室适应株的基因组进行了测序和分析。将测序后的基因组与最近发表的同一血清型野外分离株的基因组进行比较,结果显示,尽管两个样本的生物学背景不同,但在核苷酸水平上具有较高的序列保守性。相反,将哈焦血清型的两个基因组与博氏钩端螺旋体哈焦血清型的基因组进行比较,结果显示,除了其rfb基因座占据的区域外,相应染色体之间存在广泛差异。此外,将哈焦血清型基因组与不同问号钩端螺旋体血清型的基因组进行比较,使我们能够检测到一些可能赋予问号钩端螺旋体哈焦血清型适应性优势的基因组特征,包括一个可能的整合质粒和一个编码已知参与耐药性的膜转运系统的基因簇的额外拷贝。采用系统基因组学策略来更好地理解哈焦血清型在问号钩端螺旋体血清型和其他钩端螺旋体物种中的进化位置。所提出的系统发育支持这样一种假设,即两个不同物种中相似rfb基因座的存在可能是横向基因转移事件的结果。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/3a87/4956267/154f9ff8f46d/pone.0159387.g001.jpg

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