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嗜热丝状不产氧光合细菌氯弯曲菌属菌株isl-2的基因组草图序列,该菌株从冰岛斯特罗库尔间歇泉分离得到

Draft Genome Sequence of Chloroflexus sp. Strain isl-2, a Thermophilic Filamentous Anoxygenic Phototrophic Bacterium Isolated from the Strokkur Geyser, Iceland.

作者信息

Gaisin Vasil A, Ivanov Timophey M, Kuznetsov Boris B, Gorlenko Vladimir M, Grouzdev Denis S

机构信息

Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russian Federation.

Research Center of Biotechnology of the Russian Academy of Sciences, Moscow, Russian Federation

出版信息

Genome Announc. 2016 Jul 21;4(4):e00714-16. doi: 10.1128/genomeA.00714-16.

DOI:10.1128/genomeA.00714-16
PMID:27445390
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC4956463/
Abstract

We report here the draft genome sequence of the thermophilic filamentous anoxygenic phototrophic bacterium Chloroflexus sp. strain isl-2, which was isolated from the Strokkur geyser, Iceland, and contains 5,222,563 bp with a G+C content of 59.65%. The annotated genome sequence offers the genetic basis for understanding the strain's ecological role as a phototrophic bacterium within the bacterial community.

摘要

我们在此报告嗜热丝状无氧光合细菌绿弯菌属菌株isl-2的基因组序列草图,该菌株从冰岛的斯特罗库尔间歇泉分离得到,基因组大小为5,222,563 bp,G+C含量为59.65%。注释后的基因组序列为理解该菌株在细菌群落中作为光合细菌的生态作用提供了遗传基础。

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本文引用的文献

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ProDeGe: a computational protocol for fully automated decontamination of genomes.ProDeGe:一种用于基因组全自动净化的计算协议。
ISME J. 2016 Jan;10(1):269-72. doi: 10.1038/ismej.2015.100. Epub 2015 Jun 9.
2
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing.SPAdes:一种新的基因组组装算法及其在单细胞测序中的应用
J Comput Biol. 2012 May;19(5):455-77. doi: 10.1089/cmb.2012.0021. Epub 2012 Apr 16.
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Preparation of genomic DNA from bacteria.从细菌中制备基因组DNA。
Curr Protoc Mol Biol. 2001 Nov;Chapter 2:Unit 2.4. doi: 10.1002/0471142727.mb0204s56.
4
The microbial role in hot spring silicification.微生物在温泉硅化过程中的作用。
Ambio. 2004 Dec;33(8):552-8. doi: 10.1579/0044-7447-33.8.552.