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从温泉微生物垫宏基因组数据中获得的丝状无氧光合细菌“玫瑰线菌属NK_OTU - 006菌株”的基因组草图序列

Draft Genome Sequence of a Filamentous Anoxygenic Phototrophic Bacterium, " Roseilinea sp. Strain NK_OTU-006," Recovered from Metagenomic Data of a Hot Spring Microbial Mat.

作者信息

Martinez Joval N, Kawai Shigeru, Saini Mohit Kumar, Tank Marcus, Hanada Satoshi, Thiel Vera

机构信息

Department of Biological Sciences, Graduate School of Science, Tokyo Metropolitan University, Hachioji, Tokyo, Japan

Department of Natural Sciences, College of Arts and Sciences, University of St. La Salle, Bacolod City, Negros Occidental, Philippines.

出版信息

Microbiol Resour Announc. 2020 Dec 10;9(50):e01104-20. doi: 10.1128/MRA.01104-20.

DOI:10.1128/MRA.01104-20
PMID:33303662
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7729410/
Abstract

We report here the metagenome-assembled draft genome of an uncultured filamentous anoxygenic phototroph of the phylum (formerly ), " Roseilinea sp. strain NK_OTU-006," recovered from hot spring-associated microbial mats. The 3.6-Mb genome is estimated to be 94% complete and comprises 117 contigs encoding 3,203 predicted genes, including a full-length rRNA operon.

摘要

我们在此报告从与温泉相关的微生物垫中获得的一种未培养的丝状无氧光合细菌（原属于 ）“玫瑰线菌属NK_OTU - 006菌株”的宏基因组组装草图基因组。这个3.6兆碱基的基因组估计完整性为94%，由117个重叠群组成，编码3203个预测基因，包括一个全长rRNA操纵子。

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本文引用的文献

1
Evolution of Phototrophy in the Chloroflexi Phylum Driven by Horizontal Gene Transfer.水平基因转移驱动绿弯菌门光合营养的进化
Front Microbiol. 2018 Feb 19;9:260. doi: 10.3389/fmicb.2018.00260. eCollection 2018.
2
CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes.CheckM：评估从分离株、单细胞和宏基因组中获得的微生物基因组质量。
Genome Res. 2015 Jul;25(7):1043-55. doi: 10.1101/gr.186072.114. Epub 2015 May 14.
3
Prokka: rapid prokaryotic genome annotation.Prokka：快速的原核生物基因组注释。
Bioinformatics. 2014 Jul 15;30(14):2068-9. doi: 10.1093/bioinformatics/btu153. Epub 2014 Mar 18.
4
AmphoraNet: the webserver implementation of the AMPHORA2 metagenomic workflow suite.AmphoraNet：AMPHORA2 宏基因组工作流程套件的网络服务器实现。
Gene. 2014 Jan 10;533(2):538-40. doi: 10.1016/j.gene.2013.10.015. Epub 2013 Oct 19.
5
Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments.栖息在不同地热环境中的高温嗜氯光养微生物席的群落结构和功能。
Front Microbiol. 2013 Jun 3;4:106. doi: 10.3389/fmicb.2013.00106. eCollection 2013.
6
Temporal metatranscriptomic patterning in phototrophic Chloroflexi inhabiting a microbial mat in a geothermal spring.热泉微生物席中光养 Chloroflexi 的时间转录组模式
ISME J. 2013 Sep;7(9):1775-89. doi: 10.1038/ismej.2013.52. Epub 2013 Apr 11.
7
Structural composition of alternative complex III: variations on the same theme.交替型复合物III的结构组成：同一主题的变体
Biochim Biophys Acta. 2013 Nov-Dec;1827(11-12):1378-82. doi: 10.1016/j.bbabio.2013.01.001. Epub 2013 Jan 9.
8
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9
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