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微粒体细胞色素P450的功能:穆尔本概念解释了肝细胞中异生素的代谢。

Functioning of Microsomal Cytochrome P450s: Murburn Concept Explains the Metabolism of Xenobiotics in Hepatocytes.

作者信息

Manoj Kelath Murali, Parashar Abhinav, Gade Sudeep K, Venkatachalam Avanthika

机构信息

Satyamjayatu: The Science & Ethics Foundation Kulappully, India.

Hemoproteins Lab, School of Bio Sciences and Technology, VIT University Vellore, India.

出版信息

Front Pharmacol. 2016 Jun 23;7:161. doi: 10.3389/fphar.2016.00161. eCollection 2016.

Abstract

Using oxygen and NADPH, the redox enzymes cytochrome P450 (CYP) and its reductase (CPR) work in tandem to carry out the phase I metabolism of a vast majority of drugs and xenobiotics. As per the erstwhile understanding of the catalytic cycle, binding of the substrate to CYP's heme distal pocket allows CPR to pump electrons through a CPR-CYP complex. In turn, this trigger (a thermodynamic push of electrons) leads to the activation of oxygen at CYP's heme-center, to give Compound I, a two-electron deficient enzyme reactive intermediate. The formation of diffusible radicals and reactive oxygen species (DROS, hitherto considered an undesired facet of the system) was attributed to the heme-center. Recently, we had challenged these perceptions and proposed the murburn ("mured burning" or "mild unrestricted burning") concept to explain heme enzymes' catalytic mechanism, electron-transfer phenomena and the regulation of redox equivalents' consumption. Murburn concept incorporates a one-electron paradigm, advocating obligatory roles for DROS. The new understanding does not call for high-affinity substrate-binding at the heme distal pocket of the CYP (the first and the most crucial step of the erstwhile paradigm) or CYP-CPR protein-protein complexations (the operational backbone of the erstwhile cycle). Herein, the dynamics of reduced nicotinamide nucleotides' consumption, peroxide formation and depletion, product(s) formation, etc. was investigated with various controls, by altering reaction variables, environments and through the incorporation of diverse molecular probes. In several CYP systems, control reactions lacking the specific substrate showed comparable or higher peroxide in milieu, thereby discrediting the foundations of the erstwhile hypothesis. The profiles obtained by altering CYP:CPR ratios and the profound inhibitions observed upon the incorporation of catalytic amounts of horseradish peroxidase confirm the obligatory roles of DROS in milieu, ratifying murburn as the operative concept. The mechanism of uncoupling (peroxide/water formation) was found to be dependent on multiple one and two electron equilibriums amongst the reaction components. The investigation explains the evolutionary implications of xenobiotic metabolism, confirms the obligatory role of diffusible reactive species in routine redox metabolism within liver microsomes and establishes that a redox enzyme like CYP enhances reaction rates (achieves catalysis) via a novel (hitherto unknown) modality.

摘要

氧化还原酶细胞色素P450(CYP)及其还原酶(CPR)利用氧气和烟酰胺腺嘌呤二核苷酸磷酸(NADPH)协同作用,对绝大多数药物和外源性物质进行I相代谢。根据以往对催化循环的理解,底物与CYP血红素远端口袋的结合使得CPR能够通过CPR-CYP复合物泵送电子。相应地,这种触发(电子的热力学推动)导致CYP血红素中心的氧气活化,生成化合物I,一种缺两个电子的酶反应中间体。可扩散自由基和活性氧物种(DROS,此前被认为是该系统的一个不良方面)的形成归因于血红素中心。最近,我们对这些观点提出了质疑,并提出了murburn(“温和燃烧”或“轻度无限制燃烧”)概念来解释血红素酶的催化机制、电子转移现象以及氧化还原当量消耗的调节。Murburn概念包含单电子范式,主张DROS的必要作用。新的理解并不要求在CYP的血红素远端口袋处有高亲和力的底物结合(以往范式的第一步也是最关键的一步)或CYP-CPR蛋白质-蛋白质复合物形成(以往循环的操作主干)。在此,通过改变反应变量、环境并引入各种分子探针,对还原型烟酰胺核苷酸的消耗、过氧化物的形成和消耗、产物形成等的动力学进行了各种对照研究。在几个CYP系统中,缺乏特定底物的对照反应在环境中显示出相当或更高的过氧化物,从而使以往假设的基础受到质疑。通过改变CYP:CPR比例获得的图谱以及在加入催化量的辣根过氧化物酶后观察到的显著抑制作用,证实了DROS在环境中的必要作用,认可murburn为有效概念。发现解偶联(过氧化物/水形成)机制取决于反应组分之间多个单电子和双电子平衡。该研究解释了外源性物质代谢的进化意义,证实了可扩散反应性物种在肝微粒体常规氧化还原代谢中的必要作用,并确定像CYP这样的氧化还原酶通过一种新的(迄今未知的)方式提高反应速率(实现催化)。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/68b8/4918403/d4194c39b9a2/fphar-07-00161-g0001.jpg

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