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质体蓝素和铁氧还蛋白是特定的电子载体还是通用的氧化还原电容器?两种光合蛋白的经典和默尔本观点。

Are plastocyanin and ferredoxin specific electron carriers or generic redox capacitors? Classical and murburn perspectives on two photosynthetic proteins.

机构信息

Department of Biochemistry, Satyamjayatu: The Science & Ethics Foundation, Palakkad, India.

Department of Biotechnology and Bioinformatics, Bishop Heber College (Autonomous), Tiruchirappalli, India.

出版信息

J Biomol Struct Dyn. 2022 Mar;40(5):1995-2009. doi: 10.1080/07391102.2020.1835715. Epub 2020 Oct 19.

Abstract

In the light reaction of oxygenic photosynthesis, plastocyanin (PC) and ferredoxins (Fd) are small/diffusible redox-active proteins playing key roles in electron transfer/transport phenomena. In the Z-scheme mechanistic purview, they are considered as specific affinity binding-based electron-relay agents, linking the functions of Cytochrome (Cyt. ), Photosystem I (PS I) and Fd:NADPH oxidoreductase (FNR). The murburn explanation for photolytic photophosphorylation deems PC/Fd as generic 'redox capacitors', temporally accepting and releasing one-electron equivalents in reaction milieu. Herein, we explore the two theories with respect to structural, distributional and functional aspects of PC/Fd. Amino acid residues located on the surface loci of key patches of PC/Fd vary in electrostatic/contour (topography) signatures. Crystal structures of four different complexes each of Cyt.-PC and Fd-FNR show little conservation in the contact-surfaces, thereby discrediting 'affinity binding-based electron transfers (ET)' as an evolutionary logic. Further, thermodynamic and kinetic data of wildtype and mutant proteins interactions do not align with Z-scheme. Furthermore, micromolar physiological concentrations of PC and the non-conducive architecture of chloroplasts render the classical model untenable. In the murburn model, as PC is optional, the observation that plants lacking PC survive and grow is justified. Further, the low physiological concentration/distribution of PC in chloroplast lumen/stroma is supported by murburn equilibriums, as higher concentrations would limit electron transfers. Thus, structural evidence, interactive dynamics with redox partners and physiological distribution/role of PC/Fd support the murburn perspective that these proteins serve as generic redox-capacitors in chloroplasts.Communicated by Ramaswamy H. Sarma.

摘要

在放氧光合作用的光反应中,质体蓝素 (PC) 和铁氧还蛋白 (Fd) 是小/扩散的氧化还原活性蛋白,在电子传递/传输现象中发挥关键作用。在 Z 型机制观点中,它们被认为是特定亲和力结合的电子中继剂,将细胞色素 (Cyt.)、光系统 I (PSI) 和 Fd:NADPH 氧化还原酶 (FNR) 的功能联系起来。光解磷酸化的默尔本解释认为 PC/Fd 是通用的“氧化还原电容器”,在反应环境中暂时接受和释放一个电子当量。在此,我们从结构、分布和功能方面探讨了这两种理论。位于 PC/Fd 关键斑块表面位置的氨基酸残基在静电/轮廓 (地形) 特征上有所不同。四种不同复合物的晶体结构,每种复合物都含有 Cyt.-PC 和 Fd-FNR,其接触表面几乎没有保守性,从而否定了“基于亲和力的电子转移 (ET)”作为一种进化逻辑。此外,野生型和突变蛋白相互作用的热力学和动力学数据与 Z 型方案不一致。此外,PC 的毫摩尔生理浓度和叶绿体的非传导结构使经典模型站不住脚。在默尔本模型中,由于 PC 是可选的,因此观察到缺乏 PC 的植物能够存活和生长是合理的。此外,质体蓝素在叶绿体腔/基质中的低生理浓度/分布得到了默尔本平衡的支持,因为较高的浓度会限制电子转移。因此,结构证据、与氧化还原伴侣的相互作用动力学以及 PC/Fd 的生理分布/作用支持了默尔本的观点,即这些蛋白质在叶绿体中作为通用的氧化还原电容器。由拉马萨马·H·萨玛传达。

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