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多肽的非谐理论振动光谱学

Anharmonic Theoretical Vibrational Spectroscopy of Polypeptides.

作者信息

Panek Paweł T, Jacob Christoph R

机构信息

Institute of Physical and Theoretical Chemistry, TU Braunschweig , Hans-Sommer-Str. 10, 38106 Braunschweig, Germany.

出版信息

J Phys Chem Lett. 2016 Aug 18;7(16):3084-90. doi: 10.1021/acs.jpclett.6b01451. Epub 2016 Jul 29.

Abstract

Because of the size of polypeptides and proteins, the quantum-chemical prediction of their vibrational spectra presents an exceptionally challenging task. Here, we address one of these challenges, namely, the inclusion of anharmonicities. By performing the expansion of the potential energy surface in localized-mode coordinates instead of the normal-mode coordinates, it becomes possible to calculate anharmonic vibrational spectra of polypeptides efficiently and reliably. We apply this approach to calculate the infrared, Raman, and Raman optical activity spectra of helical alanine polypeptides consisting of up to 20 amino acids. We find that while anharmonicities do not alter the band shapes, simple scaling procedures cannot account for the different shifts found for the individual bands. This closes an important gap in theoretical vibrational spectroscopy by making it possible to quantify the anharmonic contributions and opens the door to a first-principles calculation of multidimensional vibrational spectra.

摘要

由于多肽和蛋白质的尺寸,对其振动光谱进行量子化学预测是一项极具挑战性的任务。在此,我们解决其中一个挑战,即纳入非谐性。通过在局域模式坐标而非正则模式坐标中对势能面进行展开,就能够高效且可靠地计算多肽的非谐振动光谱。我们应用此方法来计算由多达20个氨基酸组成的螺旋丙氨酸多肽的红外、拉曼和拉曼光学活性光谱。我们发现,虽然非谐性不会改变谱带形状,但简单的缩放程序无法解释各个谱带出现的不同位移。这弥补了理论振动光谱学中的一个重要空白,使得量化非谐贡献成为可能,并为多维振动光谱的第一性原理计算打开了大门。

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