Szlęk Jakub, Pacławski Adam, Lau Raymond, Jachowicz Renata, Kazemi Pezhman, Mendyk Aleksander
Department of Pharmaceutical Technology and Biopharmaceutics, Jagiellonian University Medical College, Medyczna 9 St., 30-688 Cracow, Poland.
Department of Pharmaceutical Technology and Biopharmaceutics, Jagiellonian University Medical College, Medyczna 9 St., 30-688 Cracow, Poland.
Comput Methods Programs Biomed. 2016 Oct;134:137-47. doi: 10.1016/j.cmpb.2016.07.006. Epub 2016 Jul 6.
Poly(lactic-co-glycolic acid) (PLGA) has become one of the most promising in design, development, and optimization for medical applications polymers. PLGA-based multiparticulate dosage forms are usually prepared as microspheres where the size is from 5 to 100 µm, depending on the route of administration. The main objectives of the study were to develop a predictive model of mean volumetric particle size and on its basis extract knowledge of PLGA containing proteins forming behaviour.
In the present study, a model for the prediction of mean volumetric particle size developed by an rgp package of R environment is presented. Other tools like fscaret, monmlp, fugeR, MARS, SVM, kNNreg, Cubist, randomForest and piecewise linear regression are also applied during the data mining procedure.
The feature selection provided by the fscaret package reduced the original input vector from a total of 295 input variables to 10, 16 and 19. The developed models had good predictive ability, which was confirmed by a normalized root-mean-square error (NRMSE) of 6.8 to 11.1% in 10-fold cross validation training procedure. Moreover, the best models were validated using external experimental data. The superior predictiveness had a model obtained by rgp in the form of a classical equation with a normalized root-mean-squared error (NRMSE) of 6.1%.
A new approach is proposed for computational modelling of the mean particle size of PLGA microspheres and rules extraction from tree-based models. The feature selection leads to revealing chemical descriptor variables which are important in predicting the size of PLGA microspheres. In order to achieve better understanding in the relationships between particle size and formulation characteristics, the surface analysis method and rules extraction procedures were applied.
聚乳酸-乙醇酸共聚物(PLGA)已成为医学应用聚合物设计、开发和优化中最具前景的聚合物之一。基于PLGA的多颗粒剂型通常制备成微球,其尺寸根据给药途径为5至100μm。本研究的主要目的是建立平均体积粒径的预测模型,并在此基础上提取含蛋白质的PLGA形成行为的知识。
在本研究中,提出了一种由R环境的rgp包开发的预测平均体积粒径的模型。在数据挖掘过程中还应用了其他工具,如fscaret、monmlp、fugeR、MARS、SVM、kNNreg、Cubist、随机森林和分段线性回归。
fscaret包提供的特征选择将原始输入向量从总共295个输入变量减少到10、16和19个。所开发的模型具有良好的预测能力,在10折交叉验证训练过程中,归一化均方根误差(NRMSE)为6.8%至11.1%,证实了这一点。此外,使用外部实验数据对最佳模型进行了验证。rgp获得的模型具有卓越的预测性,其形式为经典方程,归一化均方根误差(NRMSE)为6.1%。
提出了一种新的方法用于PLGA微球平均粒径的计算建模和基于树模型的规则提取。特征选择有助于揭示在预测PLGA微球尺寸方面重要的化学描述符变量。为了更好地理解粒径与制剂特性之间的关系,应用了表面分析方法和规则提取程序。