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利用晶体结构预测来合理化取代金刚烷盐酸盐的水合倾向。

Using crystal structure prediction to rationalize the hydration propensities of substituted adamantane hydrochloride salts.

作者信息

Mohamed Sharmarke, Karothu Durga Prasad, Naumov Panče

机构信息

Khalifa University, PO Box 127788, Abu Dhabi, United Arab Emirates.

New York University Abu Dhabi, PO Box 129188, Abu Dhabi, United Arab Emirates.

出版信息

Acta Crystallogr B Struct Sci Cryst Eng Mater. 2016 Aug 1;72(Pt 4):551-61. doi: 10.1107/S2052520616006326. Epub 2016 Jul 16.

Abstract

The crystal energy landscapes of the salts of two rigid pharmaceutically active molecules reveal that the experimental structure of amantadine hydrochloride is the most stable structure with the majority of low-energy structures adopting a chain hydrogen-bond motif and packings that do not have solvent accessible voids. By contrast, memantine hydrochloride which differs in the substitution of two methyl groups on the adamantane ring has a crystal energy landscape where all structures within 10 kJ mol(-1) of the global minimum have solvent-accessible voids ranging from 3 to 14% of the unit-cell volume including the lattice energy minimum that was calculated after removing water from the hydrated memantine hydrochloride salt structure. The success in using crystal structure prediction (CSP) to rationalize the different hydration propensities of these substituted adamantane hydrochloride salts allowed us to extend the model to predict under blind test conditions the experimental crystal structures of the previously uncharacterized 1-(methylamino)adamantane base and its corresponding hydrochloride salt. Although the crystal structure of 1-(methylamino)adamantane was correctly predicted as the second ranked structure on the static lattice energy landscape, the crystallization of a Z' = 3 structure of 1-(methylamino)adamantane hydrochloride reveals the limits of applying CSP when the contents of the crystallographic asymmetric unit are unknown.

摘要

两种刚性药物活性分子盐的晶体能量景观表明,盐酸金刚烷胺的实验结构是最稳定的结构,大多数低能量结构采用链状氢键基序和没有溶剂可及空隙的堆积方式。相比之下,在金刚烷环上有两个甲基取代基不同的盐酸美金刚,其晶体能量景观中,在全局最小值10 kJ mol⁻¹范围内的所有结构都有溶剂可及空隙,占晶胞体积的3%至14%,包括从水合盐酸美金刚盐结构中除去水后计算出的晶格能量最小值。利用晶体结构预测(CSP)成功地解释了这些取代盐酸金刚烷盐不同的水合倾向,这使我们能够扩展该模型,在盲测条件下预测以前未表征的1-(甲氨基)金刚烷碱及其相应盐酸盐的实验晶体结构。尽管1-(甲氨基)金刚烷的晶体结构在静态晶格能量景观上被正确预测为第二排名的结构,但1-(甲氨基)盐酸金刚烷Z' = 3结构的结晶揭示了在晶体学不对称单元内容未知时应用CSP的局限性。

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