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供体-受体系统发育距离对细菌基因组移植的影响。

Impact of donor-recipient phylogenetic distance on bacterial genome transplantation.

作者信息

Labroussaa Fabien, Lebaudy Anne, Baby Vincent, Gourgues Géraldine, Matteau Dominick, Vashee Sanjay, Sirand-Pugnet Pascal, Rodrigue Sébastien, Lartigue Carole

机构信息

INRA, UMR 1332 de Biologie du Fruit et Pathologie, F-33140 Villenave d'Ornon, France University of Bordeaux, UMR 1332 de Biologie du Fruit et Pathologie, F-33140 Villenave d'Ornon, France.

Université de Sherbrooke, Département de biologie, 2500 boulevard Université Sherbrooke (Québec), J1K 2R1, Canada.

出版信息

Nucleic Acids Res. 2016 Sep 30;44(17):8501-11. doi: 10.1093/nar/gkw688. Epub 2016 Aug 3.

Abstract

Genome transplantation (GT) allows the installation of purified chromosomes into recipient cells, causing the resulting organisms to adopt the genotype and the phenotype conferred by the donor cells. This key process remains a bottleneck in synthetic biology, especially for genome engineering strategies of intractable and economically important microbial species. So far, this process has only been reported using two closely related bacteria, Mycoplasma mycoides subsp. capri (Mmc) and Mycoplasma capricolum subsp. capricolum (Mcap), and the main factors driving the compatibility between a donor genome and a recipient cell are poorly understood. Here, we investigated the impact of the evolutionary distance between donor and recipient species on the efficiency of GT. Using Mcap as the recipient cell, we successfully transplanted the genome of six bacteria belonging to the Spiroplasma phylogenetic group but including species of two distinct genera. Our results demonstrate that GT efficiency is inversely correlated with the phylogenetic distance between donor and recipient bacteria but also suggest that other species-specific barriers to GT exist. This work constitutes an important step toward understanding the cellular factors governing the GT process in order to better define and eventually extend the existing genome compatibility limit.

摘要

基因组移植(GT)可将纯化的染色体导入受体细胞,使所得生物体呈现供体细胞赋予的基因型和表型。这一关键过程仍是合成生物学的一个瓶颈,尤其是对于难以处理且具有经济重要性的微生物物种的基因组工程策略而言。到目前为止,该过程仅在两种亲缘关系密切的细菌——山羊支原体丝状亚种(Mmc)和山羊支原体山羊亚种(Mcap)中得到报道,而驱动供体基因组与受体细胞之间兼容性的主要因素仍知之甚少。在此,我们研究了供体与受体物种之间的进化距离对GT效率的影响。以Mcap作为受体细胞,我们成功移植了属于螺旋体系统发育组的六种细菌的基因组,其中包括两个不同属的物种。我们的结果表明,GT效率与供体和受体细菌之间的系统发育距离呈负相关,但也表明存在其他物种特异性的GT障碍。这项工作是朝着理解控制GT过程的细胞因素迈出的重要一步,以便更好地定义并最终扩展现有的基因组兼容性限制。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/fc9d/5041484/2bfbb549d844/gkw688fig1.jpg

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