Eawag: Swiss Federal Institute of Aquatic Science and Technology, Department of Aquatic Ecology, Überlandstrasse 133, CH-8600 Dübendorf, Switzerland.
Department of Biological Sciences, University of Notre Dame, 290B Galvin Life Sciences, Notre Dame, Indiana 46556, USA.
Nat Commun. 2016 Aug 30;7:12544. doi: 10.1038/ncomms12544.
DNA sampled from the environment (eDNA) is a useful way to uncover biodiversity patterns. By combining a conceptual model and empirical data, we test whether eDNA transported in river networks can be used as an integrative way to assess eukaryotic biodiversity for broad spatial scales and across the land-water interface. Using an eDNA metabarcode approach, we detect 296 families of eukaryotes, spanning 19 phyla across the catchment of a river. We show for a subset of these families that eDNA samples overcome spatial autocorrelation biases associated with the classical community assessments by integrating biodiversity information over space. In addition, we demonstrate that many terrestrial species are detected; thus suggesting eDNA in river water also incorporates biodiversity information across terrestrial and aquatic biomes. Environmental DNA transported in river networks offers a novel and spatially integrated way to assess the total biodiversity for whole landscapes and will transform biodiversity data acquisition in ecology.
从环境中采样的 DNA(eDNA)是揭示生物多样性模式的一种有效方法。通过结合概念模型和实证数据,我们测试了在河流网络中运输的 eDNA 是否可以作为一种综合方法,用于评估广泛的空间尺度和陆地-水域界面的真核生物多样性。我们使用 eDNA 代谢条码方法,在河流流域中检测到 296 个真核生物家族,涵盖 19 个门。我们表明,对于其中的一部分家族来说,eDNA 样本克服了与经典群落评估相关的空间自相关偏差,通过整合空间上的生物多样性信息来实现。此外,我们还证明了许多陆地物种也被检测到;因此,这表明河流水中的 eDNA 也包含了陆地和水生生物群落的生物多样性信息。在河流网络中运输的环境 DNA 为整个景观的总生物多样性评估提供了一种新颖的、空间综合的方法,并将改变生态学中生物多样性数据的获取方式。