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用于环境DNA分析的生物信息与监测技术:综述

Bioinformation and Monitoring Technology for Environmental DNA Analysis: A Review.

作者信息

Yoon Hyo Jik, Seo Joo Hyeong, Shin Seung Hoon, Abdelhamid Mohamed A A, Pack Seung Pil

机构信息

Institute of Natural Science, Korea University, Sejong-ro 2511, Sejong 30019, Republic of Korea.

Department of Biotechnology and Bioinformatics, Korea University, Sejong-ro 2511, Sejong 30019, Republic of Korea.

出版信息

Biosensors (Basel). 2025 Aug 1;15(8):494. doi: 10.3390/bios15080494.

Abstract

Environmental DNA (eDNA) analysis has emerged as a transformative tool in environmental monitoring, enabling non-invasive detection of species and microbial communities across diverse ecosystems. This study systematically reviews the role of bioinformation technology in eDNA analysis, focusing on methodologies and applications across air, soil, groundwater, sediment, and aquatic environments. Advances in molecular biology, high-throughput sequencing, bioinformatics tools, and field-deployable detection systems have significantly improved eDNA detection sensitivity, allowing for early identification of invasive species, monitoring ecosystem health, and tracking pollutant degradation processes. Airborne eDNA monitoring has demonstrated potential for assessing microbial shifts due to air pollution and tracking pathogen transmission. In terrestrial environments, eDNA facilitates soil and groundwater pollution assessments and enhances understanding of biodegradation processes. In aquatic ecosystems, eDNA serves as a powerful tool for biodiversity assessment, invasive species monitoring, and wastewater-based epidemiology. Despite its growing applicability, challenges remain, including DNA degradation, contamination risks, and standardization of sampling protocols. Future research should focus on integrating eDNA data with remote sensing, machine learning, and ecological modeling to enhance predictive environmental monitoring frameworks. As technological advancements continue, eDNA-based approaches are poised to revolutionize environmental assessment, conservation strategies, and public health surveillance.

摘要

环境DNA(eDNA)分析已成为环境监测中的一种变革性工具,能够对不同生态系统中的物种和微生物群落进行非侵入性检测。本研究系统地综述了生物信息技术在eDNA分析中的作用,重点关注空气、土壤、地下水、沉积物和水生环境中的方法和应用。分子生物学、高通量测序、生物信息学工具和可现场部署的检测系统的进展显著提高了eDNA检测的灵敏度,有助于早期识别入侵物种、监测生态系统健康状况以及追踪污染物降解过程。空气传播的eDNA监测已显示出评估空气污染导致的微生物变化和追踪病原体传播的潜力。在陆地环境中,eDNA有助于土壤和地下水污染评估,并增进对生物降解过程的理解。在水生生态系统中,eDNA是生物多样性评估、入侵物种监测和基于废水的流行病学研究的有力工具。尽管其适用性不断增加,但仍存在挑战,包括DNA降解、污染风险以及采样方案的标准化。未来的研究应侧重于将eDNA数据与遥感、机器学习和生态建模相结合,以加强预测性环境监测框架。随着技术的不断进步,基于eDNA的方法有望彻底改变环境评估、保护策略和公共卫生监测。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/81c4/12384077/15b8c31d21f6/biosensors-15-00494-g001.jpg

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